Varaico: Literature-Extracted Genetic Variants

Gene:ABCA1
Variant:p.W590S
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ABCA1

NM_005502.4:p.W590S

Associated Papers

Functional characterization of genetic variants affecting the intracellular domains of ATP-binding cassette transporter A1 (ABCA1).

Teigen M et al.

Journal of Lipid Research, 2025

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.

Orlic-Milacic M et al.

Database : the Journal of Biological Databases and Curation, 2024

38713862 (PubMed )
Supplement: baae031_supp.zip › suppl_data › Database_Orlic_Milacic_Reactome_of_Disease_Variants_SupplementaryTable1.docx

Functional characterization of missense variants affecting the extracellular domains of ABCA1 using a fluorescence-based assay.

Teigen M et al.

Journal of Lipid Research, 2024

Shared and divergent contribution of vitamin A and oxytocin to the aetiology of autism spectrum disorder.

Wang T et al.

Computational and Structural Biotechnology Journal, 2023

38213898 (PubMed )
Supplement: mmc2.xlsx › RIVs_in_VARGs

Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes.

Monti R et al.

Nature Communications, 2022

Multiancestry exome sequencing reveals INHBE mutations associated with favorable fat distribution and protection from diabetes.

Akbari P et al.

Nature Communications, 2022

35999217 (PubMed )
Supplement: 41467_2022_32398_MOESM4_ESM.xlsx › Supp._Data_4

ABCA7, a Genetic Risk Factor Associated with Alzheimer's Disease Risk in African Americans.

Stepler KE et al.

Journal of Alzheimer's Disease : Jad, 2022

Computational SNP Analysis and Molecular Simulation Revealed the Most Deleterious Missense Variants in the NBD1 Domain of Human ABCA1 Transporter.

Dash R et al.

International Journal of Molecular Sciences, 2020

33066695 (PubMed )
Supplement: ijms-21-07606-s001.zip › Supplementary_Files › Supplementary_File_1..xlsx › Sheet1

Genome-wide rare variant analysis for thousands of phenotypes in over 70,000 exomes from two cohorts.

Cirulli ET et al.

Nature Communications, 2020

31992710 (PubMed )
Supplement: 41467_2020_14288_MOESM1_ESM.pdf

Apolipoprotein A-I directly interacts with extracellular domain 1 of human ABCA1.

Kawanobe T et al.

Bioscience, Biotechnology, and Biochemistry, 2019

Structural Biology Helps Interpret Variants of Uncertain Significance in Genes Causing Endocrine and Metabolic Disorders.

Ittisoponpisan S et al.

Journal of the Endocrine Society, 2018

30019023 (PubMed )
Supplement: js.2018-00077.sd2.xls › Sheet1

Peripheral neuropathy in Tangier disease: A literature review and assessment.

Mercan M et al.

Journal of the Peripheral Nervous System : Jpns, 2018

Exome chip meta-analysis identifies novel loci and East Asian-specific coding variants that contribute to lipid levels and coronary artery disease.

Lu X et al.

Nature Genetics, 2017

29083407 (PubMed )
Supplement: NIHMS909133-supplement-2.xlsx › Supplementary_Table_11

Role of apolipoproteins, ABCA1 and LCAT in the biogenesis of normal and aberrant high density lipoproteins.

Zannis VI et al.

Journal of Biomedical Research, 2017

Structure of the Human Lipid Exporter ABCA1.

Qian H et al.

Cell, 2017

PI(4,5)P2 Is Translocated by ABCA1 to the Cell Surface Where It Mediates Apolipoprotein A1 Binding and Nascent HDL Assembly.

Gulshan K et al.

Circulation Research, 2016

Targeted next-generation sequencing to diagnose disorders of HDL cholesterol.

Sadananda SN et al.

Journal of Lipid Research, 2015

HDL biogenesis, remodeling, and catabolism.

Zannis VI et al.

Handbook of Experimental Pharmacology, 2015

Re-sequencing expands our understanding of the phenotypic impact of variants at GWAS loci.

Service SK et al.

Plos Genetics, 2014

A Comprehensive In Silico Analysis of the Functional and Structural Impact of Nonsynonymous SNPs in the ABCA1 Transporter Gene.

Marín-Martín FR et al.

Cholesterol, 2014

Sphingomyelin depletion impairs anionic phospholipid inward translocation and induces cholesterol efflux.

Gulshan K et al.

The Journal of Biological Chemistry, 2013

Differential phospholipid substrates and directional transport by ATP-binding cassette proteins ABCA1, ABCA7, and ABCA4 and disease-causing mutants.

Quazi F et al.

The Journal of Biological Chemistry, 2013

Molecular mechanisms of disease-causing missense mutations.

Stefl S et al.

Journal of Molecular Biology, 2013

ABCA1 mediates unfolding of apolipoprotein AI N terminus on the cell surface before lipidation and release of nascent high-density lipoprotein.

Wang S et al.

Arteriosclerosis, Thrombosis, and Vascular Biology, 2013

ATP hydrolysis-dependent conformational changes in the extracellular domain of ABCA1 are associated with apoA-I binding.

Nagao K et al.

Journal of Lipid Research, 2012

The effects of neurological disorder-related codon variations of ABCA13 on the function of the ABC protein.

Tomioka M et al.

Bioscience, Biotechnology, and Biochemistry, 2012

Ubiquitin-mediated proteasomal degradation of ABC transporters: a new aspect of genetic polymorphisms and clinical impacts.

Nakagawa H et al.

Journal of Pharmaceutical Sciences, 2011

ABC transporters, atherosclerosis and inflammation.

Fitzgerald ML et al.

Atherosclerosis, 2010

Tangier disease phenotype diversity in dizygous twin sisters.

Pichit P et al.

Revue Neurologique, 2010

The genetics of high-density lipoprotein metabolism: clinical relevance for therapeutic approaches.

Strang AC et al.

The American Journal of Cardiology, 2009

A novel missense mutation of ABCA1 in transmembrane alpha-helix in a Japanese patient with Tangier disease.

Maekawa M et al.

Atherosclerosis, 2009

Sodium taurocholate-dependent lipid efflux by ABCA1: effects of W590S mutation on lipid translocation and apolipoprotein A-I dissociation.

Nagao K et al.

Journal of Lipid Research, 2009

Formation of two intramolecular disulfide bonds is necessary for ApoA-I-dependent cholesterol efflux mediated by ABCA1.

Hozoji M et al.

The Journal of Biological Chemistry, 2009

Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases.

Ryu GM et al.

Nucleic Acids Research, 2009

19139070 (PubMed )
Supplement: gkn1008_nar-01723-s-2008-File009.xls › TypeI_

ABCA1 mutants reveal an interdependency between lipid export function, apoA-I binding activity, and Janus kinase 2 activation.

Vaughan AM et al.

Journal of Lipid Research, 2009

The ABCA1 Q597R mutant undergoes trafficking from the ER upon ER stress.

Tanaka AR et al.

Biochemical and Biophysical Research Communications, 2008

Genetic etiology of isolated low HDL syndrome: incidence and heterogeneity of efflux defects.

Kiss RS et al.

Arteriosclerosis, Thrombosis, and Vascular Biology, 2007

ABCA1: at the nexus of cholesterol, HDL and atherosclerosis.

Attie AD

Trends in Biochemical Sciences, 2007

Specific mutations in ABCA1 have discrete effects on ABCA1 function and lipid phenotypes both in vivo and in vitro.

Singaraja RR et al.

Circulation Research, 2006

Apolipoprotein A-I activates Cdc42 signaling through the ABCA1 transporter.

Nofer JR et al.

Journal of Lipid Research, 2006

Role of apoA-I, ABCA1, LCAT, and SR-BI in the biogenesis of HDL.

Zannis VI et al.

Journal of Molecular Medicine (berlin, Germany), 2006

ATP-binding cassette transporter A1: a cell cholesterol exporter that protects against cardiovascular disease.

Oram JF et al.

Physiological Reviews, 2005

Screening for functional sequence variations and mutations in ABCA1.

Probst MC et al.

Atherosclerosis, 2004

Alpha1-syntrophin modulates turnover of ABCA1.

Munehira Y et al.

The Journal of Biological Chemistry, 2004

Probing the pathways of chylomicron and HDL metabolism using adenovirus-mediated gene transfer.

Zannis VI et al.

Current Opinion in Lipidology, 2004

Cross-linking and lipid efflux properties of apoA-I mutants suggest direct association between apoA-I helices and ABCA1.

Chroni A et al.

Biochemistry, 2004

ABCA1 and amphipathic apolipoproteins form high-affinity molecular complexes required for cholesterol efflux.

Fitzgerald ML et al.

Journal of Lipid Research, 2004

ATP-binding cassette transporter A1: regulation of cholesterol efflux.

Knight BL

Biochemical Society Transactions, 2004

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