Varaico: Literature-Extracted Genetic Variants

Gene:CAPN3
Variant:p.R490W
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CAPN3

NM_000070.3:p.R490W

Associated Papers

Reannotation of cancer mutations based on expressed RNA transcripts reveals functional non-coding mutations in melanoma.

Pepe D et al.

American Journal of Human Genetics, 2025

40359938 (PubMed )
Supplement: mmc3.xlsx › All

The genetic landscape of pediatric postural orthostatic tachycardia syndrome.

Qu H et al.

Clinical Autonomic Research : Official Journal of the Clinical Autonomic Research Society, 2025

Clinical Trial Readiness in Limb Girdle Muscular Dystrophy R1 (LGMDR1): A GRASP Consortium Study.

Hunn SM et al.

Annals of Clinical and Translational Neurology, 2025

40237364 (PubMed )
Supplement: ACN3-12-1179-s001.pdf

The Role of Integrin β1D Mislocalization in the Pathophysiology of Calpain 3-Related Limb-Girdle Muscular Dystrophy.

Valls A et al.

Cells, 2025

A genomic strategy for precision medicine in rare diseases: integrating customized algorithms into clinical practice.

Méndez-Vidal C et al.

Journal of Translational Medicine, 2025

39833864 (PubMed )
Supplement: 12967_2025_6069_MOESM3_ESM.xlsx › Validation_cases

Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings.

Schmidt A et al.

Nature Genetics, 2024

39039281 (PubMed )
Supplement: 41588_2024_1836_MOESM4_ESM.xlsx › S1

Comprehensive evaluation of AlphaMissense predictions by evidence quantification for variants of uncertain significance.

Kurtovic-Kozaric A et al.

Frontiers in Genetics, 2024

39720176 (PubMed )
Supplement: Table1.xlsx › Supplementary_Table_1

Characterization of the genomic alterations in poorly differentiated thyroid cancer.

Lee Y et al.

Scientific Reports, 2023

37932340 (PubMed )
Supplement: 41598_2023_46466_MOESM2_ESM.xlsx › P13

Genetic findings in Czech patients with limb girdle muscular dystrophy.

Zídková J et al.

Clinical Genetics, 2023

Altered expression of proteins involved in metabolism in LGMDR1 muscle is lost in cell culture conditions.

Rico A et al.

Orphanet Journal of Rare Diseases, 2023

Genome sequencing with comprehensive variant calling identifies structural variants and repeat expansions in a large fraction of individuals with ataxia and/or neuromuscular disorders.

Ek M et al.

Frontiers in Neurology, 2023

37273706 (PubMed )
Supplement: Table_2.xlsx › Blad1

Genetic-Based Treatment Strategies for Muscular Dystrophy and Congenital Myopathies.

Findlay AR et al.

Continuum (minneapolis, Minn.), 2022

Real-World Results from Combined Screening for Monogenic Genomic Health Risks and Reproductive Risks in 300 Adults.

Wildin RS et al.

Journal of Personalized Medicine, 2022

36556183 (PubMed )
Supplement: jpm-12-01962-s001.zip › jpm-1983119-supplementary.pdf

Clinico-genetic spectrum of limb-girdle muscular weakness in Austria: A multicentre cohort study.

Krenn M et al.

European Journal of Neurology, 2022

35239206 (PubMed )
Supplement: ENE-29-1815-s001.xlsx › Supplementary_Table_1

Whole-exome sequencing reveals damaging gene variants associated with hypoalphalipoproteinemia.

Dong W et al.

Journal of Lipid Research, 2022

35460704 (PubMed )
Supplement: mmc1.pdf

Disease Progression and Mutation Pattern in a Large Cohort of LGMD R1/LGMD 2A Patients from India.

Ganaraja VH et al.

Global Medical Genetics, 2022

The inflammatory pathology of dysferlinopathy is distinct from calpainopathy, Becker muscular dystrophy, and inflammatory myopathies.

Becker N et al.

Acta Neuropathologica Communications, 2022

35135626 (PubMed )
Supplement: 40478_2022_1320_MOESM1_ESM.pdf

Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes.

Wang Z et al.

Genome Medicine, 2021

34503567 (PubMed )
Supplement: 13073_2021_964_MOESM6_ESM.xlsx › Sheet1

Variants of CAPN3 cause limb-girdle muscular dystrophy type 2A in two Chinese families.

Zheng J et al.

Experimental and Therapeutic Medicine, 2021

Sequential targeted exome sequencing of 1001 patients affected by unexplained limb-girdle weakness.

Töpf A et al.

Genetics in Medicine : Official Journal of the American College of Medical Genetics, 2020

32528171 (PubMed )
Supplement: 41436_2020_840_MOESM10_ESM.xlsx › .

Comprehensive germline genomic profiles of children, adolescents and young adults with solid tumors.

Akhavanfard S et al.

Nature Communications, 2020

32371905 (PubMed )
Supplement: 41467_2020_16067_MOESM12_ESM.xlsx › Supplementary_Data_9

The Latin American experience with a next generation sequencing genetic panel for recessive limb-girdle muscular weakness and Pompe disease.

Bevilacqua JA et al.

Orphanet Journal of Rare Diseases, 2020

European muscle MRI study in limb girdle muscular dystrophy type R1/2A (LGMDR1/LGMD2A).

Barp A et al.

Journal of Neurology, 2020

The Limb-Girdle Muscular Dystrophies.

Wicklund MP

Continuum (minneapolis, Minn.), 2019

An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar.

Famiglietti ML et al.

Database : the Journal of Biological Databases and Curation, 2019

30937429 (PubMed )
Supplement: famiglietti_supplementarytables1_rev_baz040.xlsx › common

Multiparametric quantitative MRI assessment of thigh muscles in limb-girdle muscular dystrophy 2A and 2B.

Arrigoni F et al.

Muscle & Nerve, 2018

Cardiopulmonary dysfunction in patients with limb-girdle muscular dystrophy 2A.

Mori-Yoshimura M et al.

Muscle & Nerve, 2017

FRZB and melusin, overexpressed in LGMD2A, regulate integrin β1D isoform replacement altering myoblast fusion and the integrin-signalling pathway.

Jaka O et al.

Expert Reviews in Molecular Medicine, 2017

Calpain 3 deficiency affects SERCA expression and function in the skeletal muscle.

Toral-Ojeda I et al.

Expert Reviews in Molecular Medicine, 2016

Utility of a next-generation sequencing-based gene panel investigation in German patients with genetically unclassified limb-girdle muscular dystrophy.

Kuhn M et al.

Journal of Neurology, 2016

Clinical and Pathological Heterogeneity of Korean Patients with CAPN3 Mutations.

Park HJ et al.

Yonsei Medical Journal, 2016

ISPD mutations account for a small proportion of Italian Limb Girdle Muscular Dystrophy cases.

Magri F et al.

Bmc Neurology, 2015

26404900 (PubMed )
Supplement: 12883_2015_428_MOESM1_ESM.pdf

Protein and genetic diagnosis of limb girdle muscular dystrophy type 2A: The yield and the pitfalls.

Fanin M et al.

Muscle & Nerve, 2015

Muscle-specific calpain-3 is phosphorylated in its unique insertion region for enrichment in a myofibril fraction.

Ojima K et al.

Genes to Cells : Devoted to Molecular & Cellular Mechanisms, 2014

MotorPlex provides accurate variant detection across large muscle genes both in single myopathic patients and in pools of DNA samples.

Savarese M et al.

Acta Neuropathologica Communications, 2014

Risk factors for osteoporosis, falls and fractures in hereditary myopathies and sporadic inclusion body myositis - A cross sectional survey.

Danckworth F et al.

Molecular Genetics and Metabolism Reports, 2014

Eosinophilic infiltration related to CAPN3 mutations: a pathophysiological component of primary calpainopathy?

Krahn M et al.

Clinical Genetics, 2011

Transcriptional and translational effects of intronic CAPN3 gene mutations.

Nascimbeni AC et al.

Human Mutation, 2010

Skeletal muscle-specific calpain is an intracellular Na+-dependent protease.

Ono Y et al.

The Journal of Biological Chemistry, 2010

20460380 (PubMed )
Supplement: supp_M110.126946_jbc.M110.126946-1.pdf

How to tackle the diagnosis of limb-girdle muscular dystrophy 2A.

Fanin M et al.

European Journal of Human Genetics : Ejhg, 2009

Limb-girdle muscular dystrophy type 2A can result from accelerated autoproteolytic inactivation of calpain 3.

Garnham CP et al.

Biochemistry, 2009

Characterization of novel CAPN3 isoforms in white blood cells: an alternative approach for limb-girdle muscular dystrophy 2A diagnosis.

Blázquez L et al.

Neurogenetics, 2008

Calpain 3 is a modulator of the dysferlin protein complex in skeletal muscle.

Huang Y et al.

Human Molecular Genetics, 2008

Clinical, molecular, and protein correlations in a large sample of genetically diagnosed Italian limb girdle muscular dystrophy patients.

Guglieri M et al.

Human Mutation, 2008

Analysis of the UK diagnostic strategy for limb girdle muscular dystrophy 2A.

Groen EJ et al.

Brain : a Journal of Neurology, 2007

Quantitative analysis of CAPN3 transcripts in LGMD2A patients: involvement of nonsense-mediated mRNA decay.

Stehlíková K et al.

Neuromuscular Disorders : Nmd, 2007

Screening of calpain-3 autolytic activity in LGMD muscle: a functional map of CAPN3 gene mutations.

Fanin M et al.

Journal of Medical Genetics, 2007

Calpain 3: a key regulator of the sarcomere?

Duguez S et al.

The Febs Journal, 2006

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."