Varaico: Literature-Extracted Genetic Variants

Gene:CHMP5
Variant:p.D80A
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CHMP5

NM_016410.6:p.D80A

Associated Papers

Defining the mechanism of cross-reactivity for a SARS-CoV-2 Beta-elicited antibody toward omicron sub-lineages.

Ayres F et al.

Structure (london, England : 1993), 2026

Ongoing evolution of SARS-CoV-2 drives escape from mRNA vaccine-induced humoral immunity.

Roederer AL et al.

Cell Reports. Medicine, 2024

The comprehensive SARS-CoV-2 'hijackome' knowledge base.

Huuskonen S et al.

Cell Discovery, 2024

39653747 (PubMed )
Supplement: 41421_2024_748_MOESM1_ESM.xlsx › Variant_mutation_list

Dynamics of SARS-CoV-2 variants in West Africa: Insights into genomic surveillance in resource-constrained settings.

Togo J et al.

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 2024

39437881 (PubMed )
Supplement: NIHMS2035497-supplement-2.xlsx › Mutation_on_Spike

SARS-CoV-2 genomic surveillance of migrants arriving to Europe through the Mediterranean routes.

Tramuto F et al.

Journal of Global Health, 2024

38963881 (PubMed )
Supplement: jogh-14-05017-s001.pdf

Efficient SARS-CoV-2 variant detection and monitoring with Spike Screen next-generation sequencing.

Suljič A et al.

Briefings in Bioinformatics, 2024

SARS-CoV-2 variant of concern fitness and adaptation in primary human airway epithelia.

Meganck RM et al.

Cell Reports, 2024

Diverse array of neutralizing antibodies elicited upon Spike Ferritin Nanoparticle vaccination in rhesus macaques.

Sankhala RS et al.

Nature Communications, 2024

VarLOCK: sequencing-independent, rapid detection of SARS-CoV-2 variants of concern for point-of-care testing, qPCR pipelines and national wastewater surveillance.

Nan X et al.

Scientific Reports, 2023

From Alpha to Omicron: How Different Variants of Concern of the SARS-Coronavirus-2 Impacted the World.

Andre M et al.

Biology, 2023

A tool for the cheap and rapid screening of SARS-CoV-2 variants of concern (VoCs) by Sanger sequencing.

Burgos G et al.

Microbiology Spectrum, 2023

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance.

Izquierdo-Lara RW et al.

The Science of the Total Environment, 2023

36796689 (PubMed )
Supplement: mmc3.xlsx › Sheet1

[Validation of a new strategy for the identification of SARS-CoV-2 variants by sequencing the spike gene by Sanger].

Murillo E et al.

Enfermedades Infecciosas Y Microbiologia Clinica, 2023

Simultaneous detection of omicron and other SARS-CoV-2 variants by multiplex PCR MassARRAY technology.

Wacharapluesadee S et al.

Scientific Reports, 2023

Antibody-dependent cellular cytotoxicity against SARS-CoV-2 Omicron sub-lineages is reduced in convalescent sera regardless of infecting variant.

Richardson SI et al.

Cell Reports. Medicine, 2023

36603577 (PubMed )
Supplement: mmc2.pdf

Simultaneous Detection of Omicron and Other SARS-CoV-2 Variants by Multiplex PCR MassARRAY Technology.

Wacharapluesadee S et al.

Research Square, 2023

Genomic Analysis of Non-B Nucleic Acids Structures in SARS-CoV-2: Potential Key Roles for These Structures in Mutability, Translation, and Replication?

Bidula S et al.

Genes, 2023

Variable neutralizing antibody responses to 10 SARS-CoV-2 variants in natural infection with wild- type (B.1) virus, Kappa (B.1.617.1), and Delta (B.1.617.2) variants and COVISHIELD vaccine immunization in India: utility of the MSD platform.

Patil R et al.

Frontiers in Immunology, 2023

Beta, Delta, and Omicron, Deadliest Among SARS-CoV-2 Variants: A Computational Repurposing Approach.

Alam MM et al.

Evolutionary Bioinformatics Online, 2023

Genomic surveillance of genes encoding the SARS-CoV-2 spike protein to monitor for emerging variants on Jeju Island, Republic of Korea.

Ha YR et al.

Frontiers in Microbiology, 2023

Possible recombination between two variants of concern in a COVID-19 patient.

He Y et al.

Emerging Microbes & Infections, 2022

Naturally occurring spike mutations influence the infectivity and immunogenicity of SARS-CoV-2.

Peng Q et al.

Cellular & Molecular Immunology, 2022

A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants.

Hernandez MM et al.

Microbiology Spectrum, 2022

Will New Variants Emerge after Delta and Omicron?

Yang Z et al.

Aging and Disease, 2022

On the Origins of Omicron's Unique Spike Gene Insertion.

Venkatakrishnan AJ et al.

Vaccines, 2022

36146586 (PubMed )
Supplement: vaccines-10-01509-s001.zip › vaccines-1796862-supplementary-conversion.pdf

Genomic Surveillance of SARS-CoV-2 in the Southern Province of Zambia: Detection and Characterization of Alpha, Beta, Delta, and Omicron Variants of Concern.

Katowa B et al.

Viruses, 2022

Transmission Dynamics and Genomic Epidemiology of Emerging Variants of SARS-CoV-2 in Bangladesh.

Sayeed MA et al.

Tropical Medicine and Infectious Disease, 2022

36006289 (PubMed )
Supplement: tropicalmed-07-00197-s001.zip › tropicalmed-1823973-supplementary_file_1.xlsx › Sheet1

Direct comparison of RT-ddPCR and targeted amplicon sequencing for SARS-CoV-2 mutation monitoring in wastewater.

Lou EG et al.

The Science of the Total Environment, 2022

SARS-CoV-2 spike E156G/Δ157-158 mutations contribute to increased infectivity and immune escape.

Mishra T et al.

Life Science Alliance, 2022

Recapping the Features of SARS-CoV-2 and Its Main Variants: Status and Future Paths.

Ortega MA et al.

Journal of Personalized Medicine, 2022

SARS-CoV-2 Variant Spike and accessory gene mutations alter pathogenesis.

McGrath ME et al.

Biorxiv : the Preprint Server for Biology, 2022

The spike glycoprotein of SARS-CoV-2: A review of how mutations of spike glycoproteins have driven the emergence of variants with high transmissibility and immune escape.

Souza PFN et al.

International Journal of Biological Macromolecules, 2022

A robust, highly multiplexed mass spectrometry assay to identify SARS-CoV-2 variants.

Hernandez MM et al.

Medrxiv : the Preprint Server for Health Sciences, 2022

Variant-specific vaccination induces systems immune responses and potent in vivo protection against SARS-CoV-2.

Peng L et al.

Cell Reports. Medicine, 2022

SARS-CoV-2 vaccine challenge based on spike glycoprotein against several new variants.

Syahniar R et al.

Clinical and Experimental Vaccine Research, 2022

A review on evolution of emerging SARS-CoV-2 variants based on spike glycoprotein.

Ghosh N et al.

International Immunopharmacology, 2022

Divergent SARS-CoV-2 Omicron-reactive T and B cell responses in COVID-19 vaccine recipients.

GeurtsvanKessel CH et al.

Science Immunology, 2022

A comprehensive overview of identified mutations in SARS CoV-2 spike glycoprotein among Iranian patients.

Eslami S et al.

Gene, 2022

Escape from recognition of SARS-CoV-2 variant spike epitopes but overall preservation of T cell immunity.

Riou C et al.

Science Translational Medicine, 2022

34931886 (PubMed )
Supplement: NIHMS1831042-supplement-Supplementary_Figures.pdf

Conformational Flexibility and Local Frustration in the Functional States of the SARS-CoV-2 Spike B.1.1.7 and B.1.351 Variants: Mutation-Induced Allosteric Modulation Mechanism of Functional Dynamics and Protein Stability.

Verkhivker G

International Journal of Molecular Sciences, 2022

Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain.

Nabel KG et al.

Science (new York, N.y.), 2022

34855508 (PubMed )
Supplement: science.abl6251_sm.pdf

Structural basis and mode of action for two broadly neutralizing antibodies against SARS-CoV-2 emerging variants of concern.

Li W et al.

Cell Reports, 2022

34971573 (PubMed )
Supplement: mmc1.pdf

Discriminatory Weight of SNPs in Spike SARS-CoV-2 Variants: A Technically Rapid, Unambiguous, and Bioinformatically Validated Laboratory Approach.

Musso N et al.

Viruses, 2022

Longitudinal analysis of SARS-CoV-2 spike and RNA-dependent RNA polymerase protein sequences reveals the emergence and geographic distribution of diverse mutations.

Showers WM et al.

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 2022

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome.

Arana C et al.

Plos One, 2022

35025877 (PubMed )
Supplement: pone.0261014.s006.xlsx › Supplemental_File_6

SARS-CoV-2 Mutations and Their Impact on Diagnostics, Therapeutics and Vaccines.

Thakur S et al.

Frontiers in Medicine, 2022

B.1.617.2 (Delta) Variant of SARS-CoV-2: features, transmission and potential strategies.

Zhan Y et al.

International Journal of Biological Sciences, 2022

Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic.

Yavarian J et al.

Plos One, 2022

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."