Associated Papers
Domain-Specific Impacts of Spike Protein Mutations on Infectivity and Antibody Escape in SARS-CoV-2 Omicron BA.1.
Kim TH et al.
Journal of Microbiology and Biotechnology, 2025
Allosteric Control and Glycan Shielding Adaptations in the SARS-CoV-2 Spike from Early to Peak Virulence.
Chakraborty S et al.
Biorxiv : the Preprint Server for Biology, 2025
Antimalarial compounds exhibit variant- and cell-type-specific activity against SARS-CoV-2 isolated in Panama.
Quijada M et al.
Frontiers in Pharmacology, 2025
Ongoing evolution of SARS-CoV-2 drives escape from mRNA vaccine-induced humoral immunity.
Roederer AL et al.
Cell Reports. Medicine, 2024
The comprehensive SARS-CoV-2 'hijackome' knowledge base.
Huuskonen S et al.
Cell Discovery, 2024
Genomic Evolution of the SARS-CoV-2 Omicron Variant in Córdoba, Argentina (2021-2022): Analysis of Uncommon and Prevalent Spike Mutations.
Olivero NB et al.
Viruses, 2024
Dynamics of SARS-CoV-2 variants in West Africa: Insights into genomic surveillance in resource-constrained settings.
Togo J et al.
Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 2024
The evaluation of SARS-CoV-2 mutations at the early stage of the pandemic in Istanbul population.
Uyar Y et al.
Annals of Clinical Microbiology and Antimicrobials, 2024
Genome sequencing of SARS-Co-V-2 reveals mutations including F559I and V781D in S protein and LI123-124L in the nsp6 in 21K and 21L clades.
Seadawy MG et al.
Virusdisease, 2024
Highly sensitive wastewater surveillance of SARS-CoV-2 variants by targeted next-generation amplicon sequencing provides early warning of incursion in Victoria, Australia.
Merrett JE et al.
Applied and Environmental Microbiology, 2024
SARS-CoV-2 genomic surveillance of migrants arriving to Europe through the Mediterranean routes.
Tramuto F et al.
Journal of Global Health, 2024
SARS-CoV-2 journey: from alpha variant to omicron and its sub-variants.
Hattab D et al.
Infection, 2024
SARS-CoV-2 variant with the spike protein mutation F306L in the southern border provinces of Thailand.
Sila T et al.
Scientific Reports, 2024
Omicron and Delta variant prevalence detection and identification during the fourth COVID-19 wave in Mexico using wastewater-based epidemiology.
Aguayo-Acosta A et al.
Ijid Regions, 2024
SARS-CoV-2 Omicron Spike shows strong binding affinity and favourable interaction landscape with the TLR4/MD2 compared to other variants.
Chakraborty C et al.
Journal, Genetic Engineering & Biotechnology, 2024
Diverse array of neutralizing antibodies elicited upon Spike Ferritin Nanoparticle vaccination in rhesus macaques.
Sankhala RS et al.
Nature Communications, 2024
Potential immune evasion of the severe acute respiratory syndrome coronavirus 2 Omicron variants.
Chen L et al.
Frontiers in Immunology, 2024
Complete genome sequencing of SARS-CoV-2 strains that were circulating in Uzbekistan over the course of four pandemic waves.
Esonova G et al.
Plos One, 2024
Cooperative and structural relationships of the trimeric Spike with infectivity and antibody escape of the strains Delta (B.1.617.2) and Omicron (BA.2, BA.5, and BQ.1).
de Souza AS et al.
Journal of Computer-aided Molecular Design, 2023
Characterization of SARS-CoV-2 Variants in Military and Civilian Personnel of an Air Force Airport during Three Pandemic Waves in Italy.
Equestre M et al.
Microorganisms, 2023
Molecular dynamics simulations of the spike trimeric ectodomain of the SARS-CoV-2 Omicron variant: structural relationships with infectivity, evasion to immune system and transmissibility.
de Souza AS et al.
Journal of Biomolecular Structure & Dynamics, 2023
Tracking the Selective Pressure Profile and Gene Flow of SARS-CoV-2 Delta Variant in Italy from April to October 2021 and Frequencies of Key Mutations from Three Representative Italian Regions.
Lo Presti A et al.
Microorganisms, 2023
Severe Acute Respiratory Syndrome Coronavirus 2 Delta Variant Genomic Variation Associated With Breakthrough Infection in Northern California: A Retrospective Cohort Study.
Skarbinski J et al.
The Journal of Infectious Diseases, 2023
Exploring Conformational Landscapes and Cryptic Binding Pockets in Distinct Functional States of the SARS-CoV-2 Omicron BA.1 and BA.2 Trimers: Mutation-Induced Modulation of Protein Dynamics and Network-Guided Prediction of Variant-Specific Allosteric Binding Sites.
Verkhivker G et al.
Viruses, 2023
From Alpha to Omicron: How Different Variants of Concern of the SARS-Coronavirus-2 Impacted the World.
Andre M et al.
Biology, 2023
Mutational basis of serum cross-neutralization profiles elicited by infection or vaccination with SARS-CoV-2 variants.
Wagh K et al.
Biorxiv : the Preprint Server for Biology, 2023
Mutation Analysis of SARS-CoV-2 Variants Isolated from Symptomatic Cases from Andhra Pradesh, India.
Nagaraja M et al.
Viruses, 2023
A novel mutation-proof, next-generation vaccine to fight against upcoming SARS-CoV-2 variants and subvariants, designed through AI enabled approaches and tools, along with the machine learning based immune simulation: A vaccine breakthrough.
Bhattacharya M et al.
International Journal of Biological Macromolecules, 2023
Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance.
Izquierdo-Lara RW et al.
The Science of the Total Environment, 2023
[Validation of a new strategy for the identification of SARS-CoV-2 variants by sequencing the spike gene by Sanger].
Murillo E et al.
Enfermedades Infecciosas Y Microbiologia Clinica, 2023
Genetics, structure, transmission, epidemiology, immune response, and vaccine efficacies of the SARS-CoV-2 Delta variant: A comprehensive review.
Li H et al.
Reviews in Medical Virology, 2023
Detection of SARS-CoV-2 Variants via Different Diagnostics Assays Based on Single-Nucleotide Polymorphism Analysis.
Specchiarello E et al.
Diagnostics (basel, Switzerland), 2023
Binding affinity improvement analysis of multiple-mutant Omicron on 2019-nCov to human ACE2 by in silico predictions.
Li B et al.
Journal of Molecular Modeling, 2023
Genomic surveillance of SARS-CoV-2 strains circulating in Iran during six waves of the pandemic.
Sadeghi K et al.
Influenza and Other Respiratory Viruses, 2023
Whole Sequencing and Detailed Analysis of SARS-CoV-2 Genomes in Southeast Spain: Identification of Recurrent Mutations in the 20E (EU1) Variant with Some Clinical Implications.
López-Andreo MJ et al.
Diseases (basel, Switzerland), 2023
A Protein Co-Conservation Network Model Characterizes Mutation Effects on SARS-CoV-2 Spike Protein.
Zeng L et al.
International Journal of Molecular Sciences, 2023
Simultaneous detection of omicron and other SARS-CoV-2 variants by multiplex PCR MassARRAY technology.
Wacharapluesadee S et al.
Scientific Reports, 2023
Simultaneous Detection of Omicron and Other SARS-CoV-2 Variants by Multiplex PCR MassARRAY Technology.
Wacharapluesadee S et al.
Research Square, 2023
SARS-CoV-2 Omicron Variant Genomic and Phylogenetic Analysis in Iraqi Kurdistan Region.
Majed SO et al.
Genes, 2023
Genomic Analysis of Non-B Nucleic Acids Structures in SARS-CoV-2: Potential Key Roles for These Structures in Mutability, Translation, and Replication?
Bidula S et al.
Genes, 2023
An efficient and cost-effective method for directed mutagenesis at multiple dispersed sites-a case study with Omicron Spike DNA.
Rani R et al.
Biology Methods & Protocols, 2023
Genomic characterization of SARS-CoV-2 in Egypt: insights into spike protein thermodynamic stability.
Jalal D et al.
Frontiers in Microbiology, 2023
Variable neutralizing antibody responses to 10 SARS-CoV-2 variants in natural infection with wild- type (B.1) virus, Kappa (B.1.617.1), and Delta (B.1.617.2) variants and COVISHIELD vaccine immunization in India: utility of the MSD platform.
Patil R et al.
Frontiers in Immunology, 2023
Amplicon-Based Nanopore Sequencing of Patients Infected by the SARS-CoV-2 Omicron (B.1.1.529) Variant in India.
Kumar S et al.
Advances in Experimental Medicine and Biology, 2023
Beta, Delta, and Omicron, Deadliest Among SARS-CoV-2 Variants: A Computational Repurposing Approach.
Alam MM et al.
Evolutionary Bioinformatics Online, 2023
SARS-CoV-2 Spike Protein Mutations in Different Variants: A Comparison Between Vaccinated and Unvaccinated Population in Western Amazonia.
Sgorlon G et al.
Bioinformatics and Biology Insights, 2023
Genomic surveillance of genes encoding the SARS-CoV-2 spike protein to monitor for emerging variants on Jeju Island, Republic of Korea.
Ha YR et al.
Frontiers in Microbiology, 2023
Unraveling the genetic evolution of SARS-CoV-2 Recombinants using mutational dynamics across the different lineages.
Ravi V et al.
Frontiers in Medicine, 2023
Epidemiology and Characteristics of SARS-CoV-2 Variants of Concern: The Impacts of the Spike Mutations.
Cocherie T et al.
Microorganisms, 2022
Monitoring the Establishment of VOC Gamma in Minas Gerais, Brazil: A Retrospective Epidemiological and Genomic Surveillance Study.
Alves HJ et al.
Viruses, 2022