Varaico: Literature-Extracted Genetic Variants

Gene:PHGDH
Variant:p.V490M
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PHGDH

NM_006623.4:p.V490M

Associated Papers

Prenatal diagnosis of Neu-Laxova syndrome with compound heterozygous variants in PHGDH in a fetus presenting increased nuchal translucency and severe early-onset fetal growth restriction in a dichorionic diamniotic twin pregnancy.

Luo W et al.

Taiwanese Journal of Obstetrics & Gynecology, 2026

Transcriptional regulation by PHGDH drives amyloid pathology in Alzheimer's disease.

Chen J et al.

Cell, 2025

Genetic Background of Macular Telangiectasia Type 2.

Kunčič A et al.

International Journal of Molecular Sciences, 2025

39859398 (PubMed )
Supplement: ijms-26-00684-s001.zip › 20241229_Table_S3.pdf

Z-flipon variants reveal the many roles of Z-DNA and Z-RNA in health and disease.

Umerenkov D et al.

Life Science Alliance, 2023

37164635 (PubMed )
Supplement: LSA-2023-01962_TableS6.xlsx › Predicted_OMIM

Mild phenotypes of phosphoglycerate dehydrogenase deficiency by a novel mutation of PHGDH gene: Case report and literature review.

Fu J et al.

International Journal of Developmental Neuroscience : the Official Journal of the International Society for Developmental Neuroscience, 2023

Genome sequencing with comprehensive variant calling identifies structural variants and repeat expansions in a large fraction of individuals with ataxia and/or neuromuscular disorders.

Ek M et al.

Frontiers in Neurology, 2023

37273706 (PubMed )
Supplement: Table_4.xlsx › Blad1

Genome-wide data from medieval German Jews show that the Ashkenazi founder event pre-dated the 14th century.

Waldman S et al.

Cell, 2022

36455558 (PubMed )
Supplement: NIHMS1852590-supplement-MMC2.xlsx › 6

Serine biosynthesis defect due to haploinsufficiency of PHGDH causes retinal disease.

Eade K et al.

Nature Metabolism, 2021

L-serine synthesis via the phosphorylated pathway in humans.

Murtas G et al.

Cellular and Molecular Life Sciences : Cmls, 2020

The ChinaMAP analytics of deep whole genome sequences in 10,588 individuals.

Cao Y et al.

Cell Research, 2020

32355288 (PubMed )
Supplement: 41422_2020_322_MOESM14_ESM.xlsx › S7

Expanding the genotypic and phenotypic spectrum of severe serine biosynthesis disorders.

Abdelfattah F et al.

Human Mutation, 2020

D-3-Phosphoglycerate Dehydrogenase.

Grant GA

Frontiers in Molecular Biosciences, 2018

Phosphoglycerate dehydrogenase (PHGDH) deficiency without epilepsy mimicking primary microcephaly.

Poli A et al.

American Journal of Medical Genetics. Part A, 2017

Expanding preconception carrier screening for the Jewish population using high throughput microfluidics technology and next generation sequencing.

Gal M et al.

Bmc Medical Genomics, 2016

27175728 (PubMed )
Supplement: 12920_2016_184_MOESM1_ESM.xls › S1

On the phenotypic spectrum of serine biosynthesis defects.

El-Hattab AW et al.

Journal of Inherited Metabolic Disease, 2016

Identification of a premature stop codon mutation in the PHGDH gene in severe Neu-Laxova syndrome-evidence for phenotypic variability.

Mattos EP et al.

American Journal of Medical Genetics. Part A, 2015

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins.

Carmi S et al.

Nature Communications, 2014

25203624 (PubMed )
Supplement: ncomms5835-s5.xlsx › Known_small_variants

Neu-Laxova syndrome, an inborn error of serine metabolism, is caused by mutations in PHGDH.

Shaheen R et al.

American Journal of Human Genetics, 2014

Proteome-wide analysis of nonsynonymous single-nucleotide variations in active sites of human proteins.

Dingerdissen H et al.

The Febs Journal, 2013

Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.

Locasale JW et al.

Nature Genetics, 2011

L-serine synthesis in the central nervous system: a review on serine deficiency disorders.

Tabatabaie L et al.

Molecular Genetics and Metabolism, 2010

Novel mutations in 3-phosphoglycerate dehydrogenase (PHGDH) are distributed throughout the protein and result in altered enzyme kinetics.

Tabatabaie L et al.

Human Mutation, 2009

Inactivation of the 3-phosphoglycerate dehydrogenase gene in mice: changes in gene expression and associated regulatory networks resulting from serine deficiency.

Furuya S et al.

Functional & Integrative Genomics, 2008

Serine-deficiency syndromes.

de Koning TJ et al.

Current Opinion in Neurology, 2004

Congenital microcephaly and seizures due to 3-phosphoglycerate dehydrogenase deficiency: outcome of treatment with amino acids.

De Koning TJ et al.

Journal of Inherited Metabolic Disease, 2002

V490M, a common mutation in 3-phosphoglycerate dehydrogenase deficiency, causes enzyme deficiency by decreasing the yield of mature enzyme.

Pind S et al.

The Journal of Biological Chemistry, 2002

Molecular characterization of 3-phosphoglycerate dehydrogenase deficiency--a neurometabolic disorder associated with reduced L-serine biosynthesis.

Klomp LW et al.

American Journal of Human Genetics, 2000

Prenatal and early postnatal treatment in 3-phosphoglycerate-dehydrogenase deficiency.

de Koning TJ et al.

Lancet (london, England), 0

Biochemical and cellular studies of three human 3-phosphoglycerate dehydrogenase variants responsible for pathological reduced L-serine levels.

Murtas G et al.

Biofactors (oxford, England), 0

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."