Varaico: Literature-Extracted Genetic Variants

Gene:PTPN11
Variant:p.Y279S
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PTPN11

NM_002834.5:p.Y279S

Associated Papers

Understanding Molecular Basis of PTPN11-Related Diseases.

Um S et al.

Arxiv, 2025

41479460 (PubMed )
Supplement: NIHPP2511.11860v1-supplement-1.pdf

Accurate affinity models for SH2 domains from peptide binding assays and free-energy regression.

Gagoski D et al.

Protein Science : a Publication of the Protein Society, 2025

41088778 (PubMed )
Supplement: PRO-34-e70317-s008.xlsx › _S6_-_PTMVar_-_Grb2

Deep mutational scanning of the multi-domain phosphatase SHP2 reveals mechanisms of regulation and pathogenicity.

Jiang Z et al.

Nature Communications, 2025

40595497 (PubMed )
Supplement: 41467_2025_60641_MOESM5_ESM.xlsx › Clinical_Variants

Accurate sequence-to-affinity models for SH2 domains from multi-round peptide binding assays coupled with free-energy regression.

Gagoski D et al.

Biorxiv : the Preprint Server for Biology, 2025

39764007 (PubMed )
Supplement: media-1.xlsx › _S6_-_PTMVar_-_Grb2

Deep mutational scanning of a multi-domain signaling protein reveals mechanisms of regulation and pathogenicity.

Jiang Z et al.

Biorxiv : the Preprint Server for Biology, 2024

39091798 (PubMed )
Supplement: media-4.xlsx › SHP2-PTP_cSrc-KD_column

Identification of a putative molecular subtype of adult-type diffuse astrocytoma with recurrent MAPK pathway alterations.

Sievers P et al.

Acta Neuropathologica, 2024

39026106 (PubMed )
Supplement: 401_2024_2766_MOESM1_ESM.xlsx › Supplementary_Table_3

Effects of Noonan Syndrome-Germline Mutations on Mitochondria and Energy Metabolism.

Bajia D et al.

Cells, 2022

Application of CRISPR-Cas9 gene editing for congenital heart disease.

Seok H et al.

Clinical and Experimental Pediatrics, 2021

Recognition Memory in Noonan Syndrome.

Costanzo F et al.

Brain Sciences, 2021

Targeting a Pathogenic Cysteine Mutation: Discovery of a Specific Inhibitor of Y279C SHP2.

Kim JY et al.

Biochemistry, 2020

Identification of pathogenic missense mutations using protein stability predictors.

Gerasimavicius L et al.

Scientific Reports, 2020

32958805 (PubMed )
Supplement: 41598_2020_72404_MOESM2_ESM.xlsx › ClinVar

Overlapping phenotypes between SHORT and Noonan syndromes in patients with PTPN11 pathogenic variants.

Ranza E et al.

Clinical Genetics, 2020

The functional landscape of the human phosphoproteome.

Ochoa D et al.

Nature Biotechnology, 2020

31819260 (PubMed )
Supplement: EMS84831-supplement-Table_S5.xlsx › clinvar_data

Systematic analysis of the intersection of disease mutations with protein modifications.

Simpson CM et al.

Bmc Medical Genomics, 2019

31345222 (PubMed )
Supplement: 12920_2019_543_MOESM5_ESM.xlsx › S4

Decoding disease-causing mechanisms of missense mutations from supramolecular structures.

Hijikata A et al.

Scientific Reports, 2017

Pathogenesis of multiple lentigines in LEOPARD syndrome with PTPN11 gene mutation.

Motegi S et al.

Acta Dermato-venereologica, 2015

Structure-energy-based predictions and network modelling of RASopathy and cancer missense mutations.

Kiel C et al.

Molecular Systems Biology, 2014

24803665 (PubMed )
Supplement: MSB-10-5-727-s13.xls › energies

Behavioral profile in RASopathies.

Alfieri P et al.

American Journal of Medical Genetics. Part A, 2014

Delayed primary diagnosis of LEOPARD syndrome type 1.

Staub J et al.

Journal of the American Academy of Dermatology, 2013

RASopathies: Clinical Diagnosis in the First Year of Life.

Digilio MC et al.

Molecular Syndromology, 2011

Long term memory profile of disorders associated with dysregulation of the RAS-MAPK signaling cascade.

Alfieri P et al.

Behavior Genetics, 2011

Mitochondrial dysfunction and organic aciduria in five patients carrying mutations in the Ras-MAPK pathway.

Kleefstra T et al.

European Journal of Human Genetics : Ejhg, 2011

LEOPARD syndrome with recurrent PTPN11 mutation Y279C and different cutaneous manifestations: two case reports and a review of the literature.

Kalev I et al.

European Journal of Pediatrics, 2010

A novel PTPN11 missense mutation in a patient with LEOPARD syndrome.

Osawa R et al.

The British Journal of Dermatology, 2009

Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases.

Ryu GM et al.

Nucleic Acids Research, 2009

19139070 (PubMed )
Supplement: gkn1008_nar-01723-s-2008-File009.xls › TypeI-

Phosphatase-defective LEOPARD syndrome mutations in PTPN11 gene have gain-of-function effects during Drosophila development.

Oishi K et al.

Human Molecular Genetics, 2009

The RAS/MAPK syndromes: novel roles of the RAS pathway in human genetic disorders.

Aoki Y et al.

Human Mutation, 2008

Diverse driving forces underlie the invariant occurrence of the T42A, E139D, I282V and T468M SHP2 amino acid substitutions causing Noonan and LEOPARD syndromes.

Martinelli S et al.

Human Molecular Genetics, 2008

Genotype-phenotype analysis and natural history of left ventricular hypertrophy in LEOPARD syndrome.

Limongelli G et al.

American Journal of Medical Genetics. Part A, 2008

A Novel A461S Mutation of PTPN11 in a Female with LEOPARD Syndrome.

Yoshida R et al.

Clinical Pediatric Endocrinology : Case Reports and Clinical Investigations : Official Journal of the Japanese Society for Pediatric Endocrinology, 2008

Reduced phosphatase activity of SHP-2 in LEOPARD syndrome: consequences for PI3K binding on Gab1.

Hanna N et al.

Febs Letters, 2006

LEOPARD syndrome: clinical diagnosis in the first year of life.

Digilio MC et al.

American Journal of Medical Genetics. Part A, 2006

PTPN11 mutations in patients with LEOPARD syndrome: a French multicentric experience.

Keren B et al.

Journal of Medical Genetics, 2004

Clinical and molecular analysis of 30 patients with multiple lentigines LEOPARD syndrome.

Sarkozy A et al.

Journal of Medical Genetics, 2004

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."