Varaico: Literature-Extracted Genetic Variants

BRCA1

8,702 papers

RefSeq Summary

This gene encodes a 190 kD nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The BRCA1 gene contains 22 exons spanning about 110 kb of ...

Pfam Domains

zf-RING_UBOXaa 24–52UCSCRING-type zinc-finger

zf-C3HC4aa 24–64UCSCZinc finger, C3HC4 type (RING finger)

BRCT_assocaa 345–508UCSCSerine-rich domain associated with BRCT

BRCTaa 1642–1723UCSCBRCA1 C Terminus (BRCT) domain

BRCTaa 1756–1842UCSCBRCA1 C Terminus (BRCT) domain

Gene Aliases

HGNC Name

BRCA1 DNA repair associated

HGNC Alias Symbols

RNF53; BRCC1; PPP1R53; FANCS

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

88 papers

NM_007294.4

p.G1788V

c.5363G>T

Surrounding Variants

2 papers

NM_007294.4

p.G1788insFs

c.5363_5364insC

6 papers

NM_007294.4

p.G1788A

c.5363G>C

41 papers

NM_007294.4

p.G1788D

c.5363G>A

8 papers

NM_007294.4

p.C1787_G1788delFs

c.5361_5362delCA

4 papers

NM_007294.4

p.C1787_G1788delins

c.5359_5363delinsAGTGA

1 paper

NM_007294.4

p.G1788insFs

c.5363dupG

1 paper

NM_007294.4

p.G1788delFs

c.5363delC

11 papers

NM_007294.4

p.G1788C

c.5362G>T

2 papers

NM_007294.4

p.G1788R

c.5362G>C

6 papers

NM_007294.4

p.G1788S

c.5362G>A

2 papers

NM_007294.4

p.C1787W

c.5361T>G

1 paper

NM_007294.4

p.C1787delins

c.5360_5361delinsAG