Varaico: Literature-Extracted Genetic Variants

BRCA1

8,702 papers

RefSeq Summary

This gene encodes a 190 kD nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The BRCA1 gene contains 22 exons spanning about 110 kb of ...

Pfam Domains

zf-RING_UBOXaa 24–52UCSCRING-type zinc-finger

zf-C3HC4aa 24–64UCSCZinc finger, C3HC4 type (RING finger)

BRCT_assocaa 345–508UCSCSerine-rich domain associated with BRCT

BRCTaa 1642–1723UCSCBRCA1 C Terminus (BRCT) domain

BRCTaa 1756–1842UCSCBRCA1 C Terminus (BRCT) domain

Gene Aliases

HGNC Name

BRCA1 DNA repair associated

HGNC Alias Symbols

RNF53; BRCC1; PPP1R53; FANCS

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

3 papers

NM_007294.4

p.S1566fs

c.4696_4697fs

Surrounding Variants

1 paper

NM_007294.4

p.G1567_I1568insAT

c.4699_4703ins6

5 papers

NM_007294.4

p.G1567R

c.4699G>C

11 papers

NM_007294.4

p.G1567R

c.4699G>A

1 paper

NM_007294.4

p.L1564_G1567Fs

c.4692_4699delinsCFs

1 paper

NM_007294.4

p.S1566F

c.4697C>T

4 papers

NM_007294.4

p.S1566C

c.4697C>G

1 paper

NM_007294.4

p.S1566insFs

c.4697_4698insA

2 papers

NM_007294.4

p.S1566Y

c.4697C>A

1 paper

NM_007294.4

p.S1566delFs

c.4696delA

4 papers

NM_007294.4

p.G1567fs

c.4699_4700fs

7 papers

NM_007294.4

p.E1565_S1566insFs

c.4695_4696insA

2 papers

NM_007294.4

p.S1566A

c.4696T>G