Varaico: Literature-Extracted Genetic Variants

BRCA1

8,702 papers

RefSeq Summary

This gene encodes a 190 kD nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The BRCA1 gene contains 22 exons spanning about 110 kb of ...

Pfam Domains

zf-RING_UBOXaa 24–52UCSCRING-type zinc-finger

zf-C3HC4aa 24–64UCSCZinc finger, C3HC4 type (RING finger)

BRCT_assocaa 345–508UCSCSerine-rich domain associated with BRCT

BRCTaa 1642–1723UCSCBRCA1 C Terminus (BRCT) domain

BRCTaa 1756–1842UCSCBRCA1 C Terminus (BRCT) domain

Gene Aliases

HGNC Name

BRCA1 DNA repair associated

HGNC Alias Symbols

RNF53; BRCC1; PPP1R53; FANCS

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

4 papers

NM_007294.4

p.N1236_P1238delFs

c.3706_3713del8

Surrounding Variants

6 papers

NM_007294.4

p.P1238fs

c.3712_3713fs

1 paper

NM_007294.4

p.P1238delFs

c.3713delG

1 paper

NM_007294.4

p.S1239P

c.3715T>C

1 paper

NM_007294.4

p.S1239T

c.3715T>A

1 paper

NM_007294.4

p.N1235_P1238del4

c.3703_3713del12

2 papers

NM_007294.4

p.S1239fs

c.3715_3716fs

40 papers

NM_007294.4

p.P1238L

c.3713C>T

8 papers

NM_007294.4

p.P1238R

c.3713C>G

1 paper

NM_007294.4

p.P1238H

c.3713C>A

3 papers

NM_007294.4

p.P1238fs

c.3712_3713fs

5 papers

NM_007294.4

p.P1238S

c.3712C>T

1 paper

NM_007294.4

p.S1239F

c.3716C>T