Varaico: Literature-Extracted Genetic Variants

BRCA1

8,702 papers

RefSeq Summary

This gene encodes a 190 kD nuclear phosphoprotein that plays a role in maintaining genomic stability, and it also acts as a tumor suppressor. The BRCA1 gene contains 22 exons spanning about 110 kb of ...

Pfam Domains

zf-RING_UBOXaa 24–52UCSCRING-type zinc-finger

zf-C3HC4aa 24–64UCSCZinc finger, C3HC4 type (RING finger)

BRCT_assocaa 345–508UCSCSerine-rich domain associated with BRCT

BRCTaa 1642–1723UCSCBRCA1 C Terminus (BRCT) domain

BRCTaa 1756–1842UCSCBRCA1 C Terminus (BRCT) domain

Gene Aliases

HGNC Name

BRCA1 DNA repair associated

HGNC Alias Symbols

RNF53; BRCC1; PPP1R53; FANCS

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_007294.4

p.K467_L474del0

c.1400_1420del21

Surrounding Variants

7 papers

NM_007294.4

p.L474*

c.1421T>G

3 papers

NM_007294.4

p.L474S

c.1421T>C

4 papers

NM_007294.4

p.L474*

c.1421T>A

1 paper

NM_007294.4

p.N473_L474del1

c.1418_1420delAGT

1 paper

NM_007294.4

p.K468_L474del0

c.1403_1420del18

1 paper

NM_007294.4

p.L474L

c.1420T>C

2 papers

NM_007294.4

p.A469_N473del5

c.1405_1418del15

1 paper

NM_007294.4

p.L474F

c.1422A>T

1 paper

NM_007294.4

p.L474F

c.1422A>C

1 paper

NM_007294.4

p.L474fs

c.1420_1421fs

6 papers

NM_007294.4

p.N473N

c.1419C>T

1 paper

NM_007294.4

p.N473insFs

c.1417dupA