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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:CCL15

CCL15

15 papers

RefSeq Summary

This gene is located in a cluster of similar genes in the same region of chromosome 17. These genes encode CC cytokines, which are secreted proteins characterized by two adjacent cysteines. The produc...

Pfam Domains

IL8aa 51–108UCSCSmall cytokines (intecrine/chemokine), interleukin-8 like

Gene Aliases

HGNC Name

C-C motif chemokine ligand 15

HGNC Previous Symbol

SCYA15

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

1–12 of 57 variants

2 papers

chr17:36001488 T>A

NM_032965.6

p.K2M

c.5A>T

Exome: 0.0% (AC=168, hom=1)Genome: 0.0% (AC=20, hom=0)17 overlapping SVs

2 papers

chr17:36001422 G>A

NM_032965.6

p.T24I

c.71C>T

Exome: 6.9% (AC=101054, hom=8369)Genome: 17.2% (AC=26130, hom=4392)17 overlapping SVs

2 papers

chr17:35998290 G>T

NM_032965.6

p.P80T

c.238C>A

IL8

Exome: 0.1% (AC=2090, hom=4)Genome: 0.1% (AC=173, hom=0)17 overlapping SVs

2 papers

chr17:35997840 C>T

NM_032965.6

p.R90Q

c.269G>A

IL8

Exome: 0.0% (AC=13, hom=0)Genome: 0.0% (AC=4, hom=0)17 overlapping SVs

2 papers

chr17:35997813 G>A

NM_032965.6

p.P99L

c.296C>T

IL8

Exome: 0.0% (AC=568, hom=3)Genome: 0.0% (AC=49, hom=0)17 overlapping SVs

1 paper

chr17:36001477 C>G

NM_032965.6

p.A6P

c.16G>C

Exome: 0.0% (AC=6, hom=0)Genome: 0.0% (AC=1, hom=0)17 overlapping SVs

1 paper

chr17:36001474 C>A

NM_032965.6

p.A7S

c.19G>T

exact variant not in gnomAD17 overlapping SVs

1 paper

chr17:36001465 A>C

NM_032965.6

p.C10G

c.28T>G

Exome: 0.0% (AC=2, hom=0)Genome: n/a17 overlapping SVs

1 paper

chr17:36001464 C>T

NM_032965.6

p.C10Y

c.29G>A

Exome: 0.0% (AC=6, hom=0)Genome: 0.0% (AC=5, hom=0)17 overlapping SVs

1 paper

chr17:36001453 C>A

NM_032965.6

p.V14F

c.40G>T

Exome: 0.0% (AC=2, hom=0)Genome: n/a17 overlapping SVs

1 paper

chr17:36001452 A>C

NM_032965.6

p.V14G

c.41T>G

Exome: 0.0% (AC=1, hom=0)Genome: n/a17 overlapping SVs

1 paper

chr17:36001447 C>A

NM_032965.6

p.V16F

c.46G>T

Exome: 0.0% (AC=3, hom=0)Genome: n/a17 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."