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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:CCL4

CCL4

69 papers

RefSeq Summary

The protein encoded by this gene is a mitogen-inducible monokine and is one of the major HIV-suppressive factors produced by CD8+ T-cells. The encoded protein is secreted and has chemokinetic and infl...

Pfam Domains

IL8aa 32–89UCSCSmall cytokines (intecrine/chemokine), interleukin-8 like

Gene Aliases

HGNC Name

C-C motif chemokine ligand 4

HGNC Previous Symbols

LAG1; SCYA4

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

1–12 of 92 variants

5 papers

chr17:36105271 T>A

NM_002984.4

p.S80T

c.238T>A

IL8

Exome: 22.1% (AC=322546, hom=36613)Genome: 17.8% (AC=27028, hom=2796)14 overlapping SVs

4 papers

chr17:36103967 C>T

NM_002984.4

p.A21V

c.62C>T

Exome: 0.1% (AC=1037, hom=4)Genome: 0.1% (AC=130, hom=0)14 overlapping SVs

2 papers

chr17:36103918 G>A

NM_002984.4

p.V5M

c.13G>A

Exome: 0.0% (AC=58, hom=0)Genome: 0.0% (AC=2, hom=0)14 overlapping SVs

2 papers

chr17:36103964 C>T

NM_002984.4

p.P20L

c.59C>T

Exome: 0.0% (AC=19, hom=0)Genome: 0.0% (AC=3, hom=0)14 overlapping SVs

2 papers

chr17:36104585 G>A

NM_002984.4

p.R45H

c.134G>A

IL8

Exome: 0.0% (AC=32, hom=0)Genome: 0.0% (AC=2, hom=0)14 overlapping SVs

2 papers

chr17:36104590 T>C

NM_002984.4

p.F47L

c.139T>C

IL8

Exome: 0.0% (AC=3, hom=0)Genome: n/a14 overlapping SVs

2 papers

chr17:36104630 A>G

NM_002984.4

p.Q60R

c.179A>G

IL8

Exome: 0.1% (AC=1405, hom=0)Genome: 0.1% (AC=80, hom=0)14 overlapping SVs

2 papers

chr17:36105262 C>T

NM_002984.4

p.P77S

c.229C>T

IL8

Exome: 0.0% (AC=21, hom=0)Genome: 0.0% (AC=2, hom=0)14 overlapping SVs

1 paper

chr17:36103912 C>T

NM_002984.4

p.L3F

c.7C>T

Exome: n/aGenome: 0.0% (AC=1, hom=0)14 overlapping SVs

1 paper

chr17:36103913 T>A

NM_002984.4

p.L3H

c.8T>A

exact variant not in gnomAD14 overlapping SVs

1 paper

chr17:36103917 C>G

NM_002984.4

p.C4W

c.12C>G

Exome: 0.0% (AC=22, hom=0)Genome: n/a14 overlapping SVs

1 paper

chr17:36103919 T>C

NM_002984.4

p.V5A

c.14T>C

exact variant not in gnomAD14 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."