Home Downloads UCSC Genome Browser Track Email Updates

Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:CRY1

Variant:p.N65S

CRY1

102 papers

RefSeq Summary

This gene encodes a flavin adenine dinucleotide-binding protein that is a key component of the circadian core oscillator complex, which regulates the circadian clock. This gene is upregulated by CLOCK...

Pfam Domains

DNA_photolyaseaa 5–169UCSCDNA photolyase

FAD_binding_7aa 285–486UCSCFAD binding domain of DNA photolyase

Gene Aliases

HGNC Name

cryptochrome circadian regulator 1

HGNC Previous Symbol

PHLL1

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr12:107022157 T>C

NM_004075.5

p.N65S

c.194A>G

DNA_photolyase

Exome: 0.0% (AC=16, hom=0)Genome: 0.0% (AC=8, hom=0)21 overlapping SVs

Surrounding Variants

4 papers

chr12:107022140 A>C

NM_004075.5

p.S71A

c.211T>G

DNA_photolyase

exact variant not in gnomAD21 overlapping SVs

1 paper

chr12:107022121 C>T

NM_004075.5

p.R77H

c.230G>A

DNA_photolyase

Exome: 0.0% (AC=16, hom=0)Genome: 0.0% (AC=4, hom=0)21 overlapping SVs

1 paper

chr12:107022118 C>T

NM_004075.5

p.G78E

c.233G>A

DNA_photolyase

Exome: 0.0% (AC=1, hom=0)Genome: n/a21 overlapping SVs

1 paper

chr12:107022095 T>C

NM_004075.5

p.R86G

c.256A>G

DNA_photolyase

exact variant not in gnomAD21 overlapping SVs

UCSC Genome Browser·Imprint·Privacy·Terms·Feedback·Email Updates·

Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."