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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:DUSP5

Variant:p.V88G

DUSP5

58 papers

RefSeq Summary

The protein encoded by this gene is a member of the dual specificity protein phosphatase subfamily. These phosphatases inactivate their target kinases by dephosphorylating both the phosphoserine/thre...

Pfam Domains

Rhodaneseaa 8–135UCSCRhodanese-like domain

DSPcaa 186–316UCSCDual specificity phosphatase, catalytic domain

Gene Aliases

HGNC Name

dual specificity phosphatase 5

HGNC Alias Symbol

HVH3

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr10:110498384 T>G

NM_004419.4

p.V88G

c.263T>G

Rhodanese

exact variant not in gnomAD19 overlapping SVs

Surrounding Variants

1 paper

chr10:110498388 G>C

NM_004419.4

p.L89L

c.267G>C

Rhodanese

exact variant not in gnomAD19 overlapping SVs

1 paper

chr10:110498395 G>A

NM_004419.4

p.G92S

c.274G>A

Rhodanese

Exome: 0.0% (AC=2, hom=0)Genome: n/a19 overlapping SVs

1 paper

chr10:110498354 AG>A

NM_004419.4

p.G79delFs

c.235delG

Rhodanese

Exome: 0.0% (AC=0, hom=0)Genome: n/a19 overlapping SVs

1 paper

chr10:110498419 C>T

NM_004419.4

p.R100*

c.298C>T

Rhodanese

Exome: 0.0% (AC=2, hom=0)Genome: n/a19 overlapping SVs

1 paper

chr10:110498432 C>A

NM_004419.4

p.A104D

c.311C>A

Rhodanese

Exome: 0.0% (AC=3, hom=0)Genome: 0.0% (AC=5, hom=0)19 overlapping SVs

1 paper

chr10:110498288 G>A

NM_004419.4

p.R56Q

c.167G>A

Rhodanese

Exome: 0.0% (AC=206, hom=3)Genome: 0.1% (AC=217, hom=0)19 overlapping SVs

1 paper

chr10:110498284 G>T

NM_004419.4

p.A55S

c.163G>T

Rhodanese

Exome: 0.1% (AC=1654, hom=38)Genome: 1.4% (AC=2072, hom=49)19 overlapping SVs

1 paper

chr10:110498246 C>G

NM_004419.4

p.S42W

c.125C>G

Rhodanese

Exome: 0.0% (AC=1, hom=0)Genome: n/a19 overlapping SVs

1 paper

chr10:110498228 C>T

NM_004419.4

p.A36V

c.107C>T

Rhodanese

Exome: 0.0% (AC=5, hom=0)Genome: n/a19 overlapping SVs

1 paper

chr10:110498199 C>T

NM_004419.4

p.L26L

c.78C>T

Rhodanese

Exome: 0.0% (AC=9, hom=0)Genome: 0.0% (AC=3, hom=0)19 overlapping SVs

1 paper

chr10:110498184 G>T

NM_004419.4

p.A21A

c.63G>T

Rhodanese

Exome: 0.0% (AC=2, hom=0)Genome: n/a19 overlapping SVs

2 papers

chr10:110502742 C>T

NM_004419.4

p.S134L

c.401C>T

Rhodanese

Exome: 0.0% (AC=86, hom=0)Genome: 0.0% (AC=9, hom=0)19 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."