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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:IFI6

Variant:p.K4E

IFI6

21 papers

RefSeq Summary

This gene was first identified as one of the many genes induced by interferon. The encoded protein may play a critical role in the regulation of apoptosis. A minisatellite that consists of 26 repeats ...

Pfam Domains

Ifi-6-16aa 40–122UCSCInterferon-induced 6-16 family

Gene Aliases

HGNC Name

interferon alpha inducible protein 6

HGNC Previous Symbol

G1P3

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr1:27669305 T>C

NM_002038.4

p.K4E

c.10A>G

Exome: 0.0% (AC=0, hom=0)Genome: n/a110 overlapping SVs

Surrounding Variants

1 paper

chr1:27669313 A>G

NM_002038.4

p.M1T

c.2T>C

Exome: 0.0% (AC=8, hom=0)Genome: n/a110 overlapping SVs

1 paper

chr1:27668519 C>T

NM_002038.4

p.S29S

c.87G>A

Exome: 0.2% (AC=3562, hom=4)Genome: 0.2% (AC=269, hom=1)112 overlapping SVs

1 paper

chr1:27668495 C>T

NM_002038.4

p.G37G

c.111G>A

Ifi-6-16

exact variant not in gnomAD112 overlapping SVs

1 paper

chr1:27668466 A>G

NM_002038.4

p.V47A

c.140T>C

Ifi-6-16

Exome: 0.0% (AC=1, hom=0)Genome: n/a112 overlapping SVs

1 paper

chr1:27668420 C>T

NM_002038.4

p.G50Splc

c.148+38G>A

Exome: 0.0% (AC=684, hom=4)Genome: 0.1% (AC=88, hom=1)111 overlapping SVs

1 paper

chr1:27668336 C>A

NM_002038.4

p.G63V

c.188G>T

Ifi-6-16

Exome: 0.0% (AC=0, hom=0)Genome: n/a111 overlapping SVs

1 paper

chr1:27668242 G>A

NM_002038.4

p.A94A

c.282C>T

Ifi-6-16

Exome: 0.0% (AC=0, hom=0)Genome: n/a111 overlapping SVs

2 papers

chr1:27666455 C>T

NM_002038.4

p.V107I

c.319G>A

Ifi-6-16

Exome: 0.0% (AC=172, hom=0)Genome: 0.0% (AC=49, hom=0)112 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."