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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:IFNA10

IFNA10

52 papers

RefSeq Summary

This gene encodes a protein that belongs to the type I interferon family of proteins, and is located in a cluster of alpha interferon genes on chromosome 9. Interferons are small regulatory molecules ...

Pfam Domains

Interferonaa 26–185UCSCInterferon alpha/beta domain

Gene Aliases

HGNC Name

interferon alpha 10

HGNC Alias Symbol

IFN-alphaC

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

1–12 of 27 variants

15 papers

chr9:21207038 A>T

NM_002171.2

p.C20*

c.60T>A

Exome: 20.6% (AC=279840, hom=40645)Genome: 27.9% (AC=42081, hom=6515)40 overlapping SVs

6 papers

chr9:21206606 C>A

NM_002171.2

p.W164C

c.492G>T

Interferon

exact variant not in gnomAD42 overlapping SVs

6 papers

chr9:21206606 C>G

NM_002171.2

p.W164C

c.492G>C

Interferon

Exome: 1.0% (AC=14619, hom=97)Genome: 0.8% (AC=1142, hom=9)42 overlapping SVs

5 papers

chr9:21206725 G>A

NM_002171.2

p.Q125*

c.373C>T

Interferon

Exome: 0.1% (AC=1379, hom=12)Genome: 0.8% (AC=1142, hom=26)42 overlapping SVs

4 papers

chr9:21206764 G>T

NM_002171.2

p.L112I

c.334C>A

Interferon

Exome: 17.5% (AC=256188, hom=24918)Genome: 19.6% (AC=29555, hom=3166)42 overlapping SVs

3 papers

chr9:21206917 T>A

NM_002171.2

p.I61F

c.181A>T

Interferon

Exome: 4.3% (AC=62597, hom=1725)Genome: 5.6% (AC=8492, hom=348)41 overlapping SVs

3 papers

chr9:21206744 G>C

NM_002171.2

p.D118E

c.354C>G

Interferon

exact variant not in gnomAD42 overlapping SVs

3 papers

chr9:21206744 G>T

NM_002171.2

p.D118E

c.354C>A

Interferon

Exome: 4.1% (AC=59467, hom=1469)Genome: 3.1% (AC=4737, hom=94)42 overlapping SVs

2 papers

chr9:21207006 C>G

NM_002171.2

p.S31T

c.92G>C

Interferon

Exome: 21.9% (AC=310158, hom=41542)Genome: 27.9% (AC=42201, hom=6545)40 overlapping SVs

2 papers

chr9:21206952 G>T

NM_002171.2

p.P49H

c.146C>A

Interferon

Exome: 0.1% (AC=1213, hom=25)Genome: 0.1% (AC=122, hom=1)41 overlapping SVs

2 papers

chr9:21206920 G>C

NM_002171.2

p.R60G

c.178C>G

Interferon

Exome: 4.3% (AC=62637, hom=1725)Genome: 5.6% (AC=8478, hom=347)41 overlapping SVs

2 papers

chr9:21206845 G>A

NM_002171.2

p.Q85*

c.253C>T

Interferon

Exome: 0.0% (AC=357, hom=8)Genome: 0.3% (AC=463, hom=6)41 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."