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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:LY6G5C

Variant:p.C139Y

LY6G5C

24 papers

RefSeq Summary

LY6G5C belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain ...

Pfam Domains

UPAR_LY6aa 58–142UCSCu-PAR/Ly-6 domain

Gene Aliases

HGNC Name

lymphocyte antigen 6 family member G5C

HGNC Previous Symbol

C6orf20

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr6:31676994 C>T

NM_025262.4

p.C139Y

c.416G>A

UPAR_LY6

exact variant not in gnomAD58 overlapping SVs

Surrounding Variants

1 paper

chr6:31677054 G>A

NM_025262.4

p.T119I

c.356C>T

UPAR_LY6

Exome: 0.0% (AC=50, hom=0)Genome: 0.0% (AC=3, hom=0)58 overlapping SVs

1 paper

chr6:31679197 A>G

NM_025262.4

p.C65R

c.193T>C

UPAR_LY6

Exome: 0.0% (AC=2, hom=0)Genome: 0.0% (AC=2, hom=0)60 overlapping SVs

1 paper

chr6:31679209 G>A

NM_025262.4

p.R61C

c.181C>T

UPAR_LY6

Exome: 0.8% (AC=11792, hom=536)Genome: 0.6% (AC=984, hom=29)60 overlapping SVs

2 papers

chr6:31679222 G>C

NM_025262.4

p.F56L

c.168C>G

exact variant not in gnomAD60 overlapping SVs

2 papers

chr6:31679222 G>T

NM_025262.4

p.F56L

c.168C>A

Exome: 0.0% (AC=1, hom=0)Genome: n/a60 overlapping SVs

2 papers

chr6:31679224 A>G

NM_025262.4

p.F56L

c.166T>C

Exome: 2.3% (AC=33158, hom=496)Genome: 1.8% (AC=2674, hom=42)60 overlapping SVs

17 papers

chr6:31680369 C>G

NM_025262.4

p.R2P

c.5G>C

Exome: 0.0% (AC=1, hom=0)Genome: n/a59 overlapping SVs

1 paper

chr6:31680369 C>T

NM_025262.4

p.R2H

c.5G>A

Exome: 0.0% (AC=6, hom=0)Genome: 0.0% (AC=1, hom=0)59 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."