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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:LY6G6C

LY6G6C

17 papers

RefSeq Summary

LY6G6C belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain ...

Pfam Domains

UPAR_LY6aa 18–100UCSCu-PAR/Ly-6 domain

Gene Aliases

HGNC Name

lymphocyte antigen 6 family member G6C

HGNC Previous Symbol

C6orf24

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

7 papers

chr6:31719166 C>T

NM_025261.3

p.R103Q

c.308G>A

Exome: 0.5% (AC=7559, hom=24)Genome: 0.3% (AC=417, hom=1)59 overlapping SVs

3 papers

chr6:31719231 G>A

NM_025261.3

p.R81R

c.243C>T

UPAR_LY6

Exome: 22.2% (AC=324635, hom=39156)Genome: 31.1% (AC=47217, hom=8272)59 overlapping SVs

1 paper

chr6:31721678 A>T

NM_025261.3

p.M1K

c.2T>A

exact variant not in gnomAD59 overlapping SVs

1 paper

chr6:31721673 C>T

NM_025261.3

p.A3T

c.7G>A

exact variant not in gnomAD59 overlapping SVs

1 paper

chr6:31719232 C>T

NM_025261.3

p.R81H

c.242G>A

UPAR_LY6

Exome: 0.0% (AC=122, hom=0)Genome: 0.0% (AC=7, hom=0)59 overlapping SVs

1 paper

chr6:31719212 T>A

NM_025261.3

p.N88Y

c.262A>T

UPAR_LY6

exact variant not in gnomAD59 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."