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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:LYNX1

LYNX1

14 papers

RefSeq Summary

This gene encodes a GPI-anchored, cell membrane bound member of the Ly6/uPAR (LU) superfamily of proteins containing the unique three-finger LU domain. This protein interacts with nicotinic acetylchol...

Gene Aliases

HGNC Name

Ly6/neurotoxin 1

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

1 paper

chr8:142775682 T>G

NM_177477.4

p.D22A

c.65A>C

Toxin_TOLIP

exact variant not in gnomAD6 overlapping SVs

1 paper

chr8:142775635 G>A

NM_177477.4

p.R38C

c.112C>T

Toxin_TOLIP

Exome: 0.0% (AC=16, hom=0)Genome: 0.0% (AC=2, hom=0)6 overlapping SVs

1 paper

chr8:142775628 G>A

NM_177477.4

p.P40L

c.119C>T

Toxin_TOLIP

Exome: 0.0% (AC=43, hom=0)Genome: 0.0% (AC=2, hom=0)6 overlapping SVs

1 paper

chr8:142775599 G>A

NM_177477.4

p.R50C

c.148C>T

Toxin_TOLIP

Exome: 0.0% (AC=11, hom=0)Genome: 0.0% (AC=2, hom=0)6 overlapping SVs

1 paper

chr8:142775344 C>A

NM_177477.4

p.M58I

c.174G>T

Toxin_TOLIP

Exome: 0.0% (AC=1, hom=0)Genome: n/a6 overlapping SVs

1 paper

chr8:142775319 G>A

NM_177477.4

p.R67C

c.199C>T

Toxin_TOLIP

Exome: 0.0% (AC=11, hom=0)Genome: 0.0% (AC=1, hom=0)6 overlapping SVs

1 paper

chr8:142775309 T>G

NM_177477.4

p.E70A

c.209A>C

Toxin_TOLIP

Exome: 0.0% (AC=19, hom=0)Genome: 0.0% (AC=2, hom=0)6 overlapping SVs

1 paper

chr8:142775279 G>C

NM_177477.4

p.A80G

c.239C>G

Toxin_TOLIP

Exome: 0.0% (AC=3, hom=0)Genome: n/a6 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."