Varaico: Literature-Extracted Genetic Variants

LYST

579 papers

RefSeq Summary

This gene encodes a protein that regulates intracellular protein trafficking in endosomes, and may be involved in pigmentation. Mutations in this gene are associated with Chediak-Higashi syndrome, a l...

Pfam Domains

PH_BEACHaa 3020–3115UCSCPH domain associated with Beige/BEACH

Beachaa 3133–3422UCSCBeige/BEACH domain

WD40aa 3606–3644UCSCWD domain, G-beta repeat

WD40aa 3740–3779UCSCWD domain, G-beta repeat

Gene Aliases

HGNC Name

lysosomal trafficking regulator

HGNC Previous Symbol

CHS1

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_000081.4

p.Q527R

c.1580A>G

Surrounding Variants

1 paper

NM_000081.4

p.N526T

c.1577A>C

1 paper

NM_000081.4

p.K525*

c.1573A>T

1 paper

NM_000081.4

p.V528_S529del2

c.1582_1586del6

1 paper

NM_000081.4

p.K530R

c.1589A>G

1 paper

NM_000081.4

p.A523T

c.1567G>A

2 papers

NM_000081.4

p.P532T

c.1594C>A

3 papers

NM_000081.4

p.P532L

c.1595C>T

1 paper

NM_000081.4

p.E534V

c.1601A>T

1 paper

NM_000081.4

p.L519delFs

c.1556_1557delAA

1 paper

NM_000081.4

p.E535*

c.1603G>T

1 paper

NM_000081.4

p.L519H

c.1556T>A

1 paper

NM_000081.4

p.L519F

c.1555C>T