Varaico: Literature-Extracted Genetic Variants

LYST

579 papers

RefSeq Summary

This gene encodes a protein that regulates intracellular protein trafficking in endosomes, and may be involved in pigmentation. Mutations in this gene are associated with Chediak-Higashi syndrome, a l...

Pfam Domains

PH_BEACHaa 3020–3115UCSCPH domain associated with Beige/BEACH

Beachaa 3133–3422UCSCBeige/BEACH domain

WD40aa 3606–3644UCSCWD domain, G-beta repeat

WD40aa 3740–3779UCSCWD domain, G-beta repeat

Gene Aliases

HGNC Name

lysosomal trafficking regulator

HGNC Previous Symbol

CHS1

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_000081.4

p.R309G

c.925C>G

Surrounding Variants

12 papers

NM_000081.4

p.R309*

c.925C>T

1 paper

NM_000081.4

p.S308G

c.922A>G

2 papers

NM_000081.4

p.V310insFs

c.929_930insC

1 paper

NM_000081.4

p.V310A

c.929T>C

1 paper

NM_000081.4

p.E307G

c.920A>G

1 paper

NM_000081.4

p.E307Q

c.919G>C

2 papers

NM_000081.4

p.S312C

c.935C>G

1 paper

NM_000081.4

p.N305S

c.914A>G

1 paper

NM_000081.4

p.S312_A313insFs

c.936_937insT

1 paper

NM_000081.4

p.A313A

c.939A>T

1 paper

NM_000081.4

p.D304V

c.911A>T

2 papers

NM_000081.4

p.D304N

c.910G>A