Varaico: Literature-Extracted Genetic Variants

MSH2

3,750 papers

RefSeq Summary

This locus is frequently mutated in hereditary nonpolyposis colon cancer (HNPCC). When cloned, it was discovered to be a human homolog of the E. coli mismatch repair gene mutS, consistent with the cha...

Pfam Domains

MutS_Iaa 17–132UCSCMutS domain I

MutS_IIaa 145–290UCSCMutS domain II

MutS_IIIaa 305–609UCSCMutS domain III

MutS_IVaa 473–569UCSCMutS family domain IV

MutS_Vaa 665–852UCSCMutS domain V

Gene Aliases

HGNC Name

mutS homolog 2

HGNC Previous Symbol

COCA1

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_000251.3

p.Y408insFs

c.1223_1224insA

Surrounding Variants

5 papers

NM_000251.3

p.Y408fs

c.1222_1223fs

1 paper

NM_000251.3

p.Y408delFs

c.1223delA

5 papers

NM_000251.3

p.Y408fs

c.1222_1223fs

2 papers

NM_000251.3

p.Y408insFs

c.1224dupT

1 paper

NM_000251.3

p.Y408S

c.1223A>C

12 papers

NM_000251.3

p.Y408C

c.1223A>G

2 papers

NM_000251.3

p.Y408F

c.1223A>T

9 papers

NM_000251.3

p.Y408insFs

c.1222_1223insT

1 paper

NM_000251.3

p.Y408insFs

c.1222_1223insTT

4 papers

NM_000251.3

p.L407L

c.1221C>G

1 paper

NM_000251.3

p.Y408_Q409delFs

c.1222_1226del5

8 papers

NM_000251.3

p.Y408*

c.1224T>A