Varaico: Literature-Extracted Genetic Variants

MSH2

3,750 papers

RefSeq Summary

This locus is frequently mutated in hereditary nonpolyposis colon cancer (HNPCC). When cloned, it was discovered to be a human homolog of the E. coli mismatch repair gene mutS, consistent with the cha...

Pfam Domains

MutS_Iaa 17–132UCSCMutS domain I

MutS_IIaa 145–290UCSCMutS domain II

MutS_IIIaa 305–609UCSCMutS domain III

MutS_IVaa 473–569UCSCMutS family domain IV

MutS_Vaa 665–852UCSCMutS domain V

Gene Aliases

HGNC Name

mutS homolog 2

HGNC Previous Symbol

COCA1

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_000251.3

p.K659T

c.1976A>C

Surrounding Variants

1 paper

NM_000251.3

p.K659_D660insFs

c.1977_1978insT

1 paper

NM_000251.3

p.K659K

c.1977A>G

2 papers

NM_000251.3

p.D660delFs

c.1978delG

2 papers

NM_000251.3

p.D660_G669del0

c.1979_2005del27

1 paper

NM_000251.3

p.E658E

c.1974A>G

4 papers

NM_000251.3

p.D660fs

c.1978_1979fs

7 papers

NM_000251.3

p.D660_K661delFs

c.1980_1981delTA

6 papers

NM_000251.3

p.D660fs

c.1978_1979fs

12 papers

NM_000251.3

p.D660G

c.1979A>G

1 paper

NM_000251.3

p.E658G

c.1973A>G

1 paper

NM_000251.3

p.E658K

c.1972G>A

1 paper

NM_000251.3

p.K659insFs

c.1977dupA