Varaico: Literature-Extracted Genetic Variants

POGZ

250 papers

RefSeq Summary

The protein encoded by this gene appears to be a zinc finger protein containing a transposase domain at the C-terminus. This protein was found to interact with the transcription factor SP1 in a yeast ...

Pfam Domains

zf-POGZaa 749–791UCSCPOGZ-like double zinc finger

zf-C2H2_Z280C_Daa 811–847UCSCZ280C/D-like C2H2 zinc finger

HTH_Tnp_Tc5aa 1024–1085UCSCTc5 transposase DNA-binding domain

DDE_1aa 1154–1302UCSCDDE superfamily endonuclease

Gene Aliases

HGNC Name

pogo transposable element derived with ZNF domain

HGNC Alias Symbols

KIAA0461; ZNF635; ZNF280E

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

7 papers

NM_015100.4

p.R979*

c.2935C>T

Surrounding Variants

2 papers

NM_015100.4

p.L978insFs

c.2933_2934dupTT

2 papers

NM_015100.4

p.R979fs

c.2935_2936fs

1 paper

NM_015100.4

p.R979fs

c.2935_2936fs

4 papers

NM_015100.4

p.V975delFs

c.2924_2925delCA

1 paper

NM_015100.4

p.V975fs

c.2923_2924fs

1 paper

NM_145796.4

p.S879_V880delFs

c.2635_2638del4

2 papers

NM_015100.4

p.V975fs

c.2923_2924fs

1 paper

NM_015100.4

p.Q972P

c.2915A>C

2 papers

NM_015100.4

p.Q972*

c.2914C>T

1 paper

NM_015100.4

p.Q991Q

c.2973G>A

1 paper

NM_015100.4

p.S964G

c.2890A>G

1 paper

NM_015100.4

p.G962fs

c.2884_2885fs