Varaico: Literature-Extracted Genetic Variants

POGZ

250 papers

RefSeq Summary

The protein encoded by this gene appears to be a zinc finger protein containing a transposase domain at the C-terminus. This protein was found to interact with the transcription factor SP1 in a yeast ...

Pfam Domains

zf-POGZaa 749–791UCSCPOGZ-like double zinc finger

zf-C2H2_Z280C_Daa 811–847UCSCZ280C/D-like C2H2 zinc finger

HTH_Tnp_Tc5aa 1024–1085UCSCTc5 transposase DNA-binding domain

DDE_1aa 1154–1302UCSCDDE superfamily endonuclease

Gene Aliases

HGNC Name

pogo transposable element derived with ZNF domain

HGNC Alias Symbols

KIAA0461; ZNF635; ZNF280E

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_145796.4

p.F784fs

c.2350_2351fs

Surrounding Variants

1 paper

NM_015100.4

p.F879fs

c.2635_2636fs

3 papers

NM_015100.4

p.F879_P880delFs

c.2635_2638del4

NM_145796.4

p.F784_P785delFs

c.2350_2353del4

1 paper

NM_015100.4

p.T881delFs

c.2641delT

1 paper

NM_015100.4

p.T881fs

c.2641_2642fs

3 papers

NM_015100.4

p.N882fs

c.2644_2645fs

1 paper

NM_015100.4

p.N882fs

c.2644_2645fs

2 papers

NM_015100.4

p.N882_K883delFs

c.2646_2647delTG

1 paper

NM_015100.4

p.A885delFs

c.2655delG

1 paper

NM_015100.4

p.N872delFs

c.2616delA

1 paper

NM_015100.4

p.T886fs

c.2656_2657fs

1 paper

NM_015100.4

p.N872fs

c.2614_2615fs

1 paper

NM_015100.4

p.K871N

c.2613G>T