Varaico: Literature-Extracted Genetic Variants

PTCH1

2,098 papers

RefSeq Summary

This gene encodes a member of the patched family of proteins and a component of the hedgehog signaling pathway. Hedgehog signaling is important in embryonic development and tumorigenesis. The encoded ...

Pfam Domains

TRA2_Naa 147–297UCSCTransformer protein 2 N-terminal domain

Sterol-sensingaa 462–616UCSCSterol-sensing domain of SREBP cleavage-activation

Gene Aliases

HGNC Name

patched 1

HGNC Previous Symbol

NBCCS

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

25 papers

NM_000264.5

p.A562A

c.1686C>T

Surrounding Variants

1 paper

NM_000264.5

p.A563S

c.1687G>T

2 papers

NM_000264.5

p.A563T

c.1687G>A

1 paper

NM_000264.5

p.A562delFs

c.1686delG

1 paper

NM_000264.5

p.A562V

c.1685C>T

6 papers

NM_000264.5

p.A563V

c.1688C>T

1 paper

NM_000264.5

p.A563fs

c.1687_1688fs

3 papers

NM_000264.5

p.M561R

c.1682T>G

1 paper

NM_000264.5

p.L564L

c.1690T>C

3 papers

NM_000264.5

p.L564*

c.1691T>G

3 papers

NM_000264.5

p.L564*

c.1691T>A

1 paper

NM_000264.5

p.F560C

c.1679T>G

1 paper

NM_000264.5

p.T551_F559del9

c.1651_1676del27