Varaico: Literature-Extracted Genetic Variants

PTPRF

257 papers

RefSeq Summary

The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell gro...

Pfam Domains

I-setaa 33–124UCSCImmunoglobulin I-set domain

I-setaa 135–225UCSCImmunoglobulin I-set domain

I-setaa 232–315UCSCImmunoglobulin I-set domain

fn3aa 320–407UCSCFibronectin type III domain

fn3aa 415–506UCSCFibronectin type III domain

fn3aa 513–600UCSCFibronectin type III domain

Gene Aliases

HGNC Name

protein tyrosine phosphatase receptor type F

HGNC Previous Symbol

LAR

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_002840.5

p.F561L

c.1683C>G

Surrounding Variants

1 paper

NM_002840.5

p.F561L

c.1683C>A

3 papers

NM_002840.5

p.D562N

c.1684G>A

1 paper

NM_002840.5

p.D562G

c.1685A>G

1 paper

NM_002840.5

p.F561L

c.1681T>C

1 paper

NM_002840.5

p.T560T

c.1680C>T

1 paper

NM_002840.5

p.V559E

c.1676T>A

1 paper

NM_002840.5

p.V559A

c.1676T>C

1 paper

NM_002840.5

p.V559G

c.1676T>G

1 paper

NM_002840.5

p.V559_S565del0

c.1675_1695del21

1 paper

NM_002840.5

p.V559del1

c.1675_1677delGTG

1 paper

NM_002840.5

p.K558E

c.1672A>G

1 paper

NM_002840.5

p.K558_L572del0

c.1673_1714del42