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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:RARRES2

Variant:p.G16_V19del0

RARRES2

15 papers

RefSeq Summary

This gene encodes a secreted chemotactic protein that initiates chemotaxis via the ChemR23 G protein-coupled seven-transmembrane domain ligand. Expression of this gene is upregulated by the synthetic ...

Gene Aliases

HGNC Name

retinoic acid receptor responder 2

HGNC Alias Symbols

TIG2; HP10433

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr7:150340554 ACGCCCACGC>A

NM_002889.4

p.G16_V19del0

c.47_55del9

exact variant not in gnomAD20 overlapping SVs

Surrounding Variants

1 paper

chr7:150340147 G>A

NM_002889.4

p.R78W

c.232C>T

Exome: 0.0% (AC=6, hom=0)Genome: n/a20 overlapping SVs

1 paper

chr7:150339010 G>T

NM_002889.4

p.C117*

c.351C>A

Exome: 0.0% (AC=5, hom=0)Genome: 0.0% (AC=2, hom=0)21 overlapping SVs

1 paper

chr7:150338988 G>T

NM_002889.4

p.R125R

c.373C>A

Exome: 0.3% (AC=4507, hom=166)Genome: 2.9% (AC=4394, hom=205)21 overlapping SVs

1 paper

chr7:150338677 C>T

NM_002889.4

p.S147N

c.440G>A

Exome: 0.0% (AC=152, hom=2)Genome: 0.0% (AC=38, hom=0)21 overlapping SVs

1 paper

chr7:150338654 C>T

NM_002889.4

p.A155T

c.463G>A

Exome: 0.0% (AC=12, hom=0)Genome: 0.0% (AC=1, hom=0)21 overlapping SVs

1 paper

chr7:150338645 T>C

NM_002889.4

p.K158E

c.472A>G

exact variant not in gnomAD21 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."