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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:SIDT1

Variant:p.A8E

SIDT1

74 papers

RefSeq Summary

The protein encoded by this gene belongs to SID1 family of transmembrane dsRNA-gated channels. Family members transport dsRNA into cells and are required for systemic RNA interference. [provided by Re...

Pfam Domains

SID-1_RNA_chanaa 184–827UCSCdsRNA-gated channel SID-1

Gene Aliases

HGNC Name

SID1 transmembrane family member 1

HGNC Alias Symbols

FLJ20174; SID-1

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr3:113533044 C>A

NM_017699.3

p.A8E

c.23C>A

Exome: 0.0% (AC=0, hom=0)Genome: n/a70 overlapping SVs

Surrounding Variants

1 paper

chr3:113533052 T>C

NM_017699.3

p.C11R

c.31T>C

Exome: 0.0% (AC=115, hom=1)Genome: 0.0% (AC=12, hom=0)70 overlapping SVs

1 paper

chr3:113533115 C>A

NM_017699.3

p.P32T

c.94C>A

Exome: 4.5% (AC=62362, hom=1701)Genome: 3.8% (AC=5721, hom=230)70 overlapping SVs

1 paper

chr3:113533182 G>A

NM_017699.3

p.G54E

c.161G>A

Exome: 0.0% (AC=0, hom=0)Genome: n/a70 overlapping SVs

1 paper

chr3:113533184 G>A

NM_017699.3

p.V55M

c.163G>A

Exome: 0.0% (AC=3, hom=0)Genome: n/a70 overlapping SVs

2 papers

chr3:113533195 C>T

NM_017699.3

p.L58L

c.174C>T

Exome: 8.4% (AC=118991, hom=5934)Genome: 13.4% (AC=20302, hom=1870)70 overlapping SVs

1 paper

chr3:113533208 A>T

NM_017699.3

p.I63F

c.187A>T

Exome: 0.0% (AC=0, hom=0)Genome: n/a70 overlapping SVs

1 paper

chr3:113533226 A>T

NM_017699.3

p.T69S

c.205A>T

exact variant not in gnomAD70 overlapping SVs

1 paper

chr3:113533227 C>G

NM_017699.3

p.T69S

c.206C>G

Exome: 0.0% (AC=77, hom=0)Genome: 0.0% (AC=3, hom=0)70 overlapping SVs

1 paper

chr3:113533235 C>T

NM_017699.3

p.P72S

c.214C>T

Exome: 0.0% (AC=0, hom=0)Genome: n/a70 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."