Varaico: Literature-Extracted Genetic Variants

SPOCK2

36 papers

RefSeq Summary

This gene encodes a protein which binds with glycosaminoglycans to form part of the extracellular matrix. The protein contains thyroglobulin type-1, follistatin-like, and calcium-binding domains, and ...

Pfam Domains

Kazal_2aa 133–180UCSCKazal-type serine protease inhibitor domain

SPARC_Ca_bdgaa 196–305UCSCSecreted protein acidic and rich in cysteine Ca binding region

Thyroglobulin_1aa 313–376UCSCThyroglobulin type-1 repeat

Gene Aliases

HGNC Name

SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

HGNC Alias Symbols

KIAA0275; testican-2

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_001244950.2

p.R120Splc

c.360-20C>A

Surrounding Variants

1 paper

NM_001244950.2

p.C90F

c.269G>T

1 paper

NM_001244950.2

p.D80N

c.238G>A

1 paper

NM_001244950.2

p.Y69C

c.206A>G

1 paper

NM_001244950.2

p.D68N

c.202G>A

1 paper

NM_001244950.2

p.E66_D67Splc

c.199-36C>T

1 paper

NM_001244950.2

p.V174L

c.520G>T

1 paper

NM_001244950.2

p.V174L

c.520G>C

1 paper

NM_001244950.2

p.R212G

c.634C>G

1 paper

NM_001244950.2

p.G237R

c.709G>C

1 paper

NM_001244950.2

p.G237R

c.709G>A

1 paper

NM_001244950.2

p.A244insFs

c.730_731ins7

1 paper

NM_001244950.2

p.A244fs

c.730_731fs