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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:TFDP1

Variant:p.G25A

TFDP1

113 papers

RefSeq Summary

This gene encodes a member of a family of transcription factors that heterodimerize with E2F proteins to enhance their DNA-binding activity and promote transcription from E2F target genes. The encoded...

Pfam Domains

WHD_E2F_TDPaa 112–193UCSCE2F/DP family winged-helix DNA-binding domain

DPaa 200–338UCSCTranscription factor DP

Gene Aliases

HGNC Name

transcription factor Dp-1

HGNC Alias Symbols

Dp-1; DRTF1; DP1; DILC

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr13:113611057 G>C

NM_007111.5

p.G25A

c.74G>C

Exome: 0.0% (AC=1, hom=0)Genome: n/a3 overlapping SVs

Surrounding Variants

1 paper

chr13:113611062 G>A

NM_007111.5

p.G27S

c.79G>A

exact variant not in gnomAD3 overlapping SVs

1 paper

chr13:113611062 G>C

NM_007111.5

p.G27R

c.79G>C

exact variant not in gnomAD3 overlapping SVs

1 paper

chr13:113611023 C>CN

NM_007111.5

p.L14fs

c.40_41fs

exact variant not in gnomAD3 overlapping SVs

2 papers

chr13:113611021 A>G

NM_007111.5

p.E13G

c.38A>G

exact variant not in gnomAD3 overlapping SVs

1 paper

chr13:113611018 G>T

NM_007111.5

p.G12V

c.35G>T

exact variant not in gnomAD3 overlapping SVs

1 paper

chr13:113610990 C>T

NM_007111.5

p.D4_A5Splc

c.13-6C>T

Exome: 5.1% (AC=74127, hom=2163)Genome: 3.8% (AC=5835, hom=171)3 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."