Home Downloads UCSC Genome Browser Track Email Updates

Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:TGIF2

Variant:p.R34Q

TGIF2

21 papers

RefSeq Summary

The protein encoded by this gene is a DNA-binding homeobox protein and a transcriptional repressor, which appears to repress transcription by recruiting histone deacetylases to TGF beta-responsive gen...

Pfam Domains

Homeobox_KNaa 36–75UCSCHomeobox KN domain

Gene Aliases

HGNC Name

TGFB induced factor homeobox 2

HGNC Previous Names

TGFB-induced factor 2 (TALE family homeobox); TGFB-induced factor homeobox 2

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

1 paper

chr20:36578875 G>A

NM_021809.7

p.R34Q

c.101G>A

Exome: 0.0% (AC=36, hom=0)Genome: 0.0% (AC=1, hom=0)8 overlapping SVs

Surrounding Variants

1 paper

chr20:36578867 G>C

NM_021809.7

p.K31N

c.93G>C

exact variant not in gnomAD8 overlapping SVs

1 paper

chr20:36578867 G>T

NM_021809.7

p.K31N

c.93G>T

exact variant not in gnomAD8 overlapping SVs

1 paper

chr20:36578821 C>A

NM_021809.7

p.A16E

c.47C>A

Exome: 0.0% (AC=21, hom=0)Genome: n/a8 overlapping SVs

1 paper

chr20:36578821 C>T

NM_021809.7

p.A16V

c.47C>T

Exome: 0.0% (AC=12, hom=0)Genome: 0.0% (AC=2, hom=0)8 overlapping SVs

1 paper

chr20:36578961 C>A

NM_021809.7

p.L63M

c.187C>A

Homeobox_KN

exact variant not in gnomAD8 overlapping SVs

UCSC Genome Browser·Imprint·Privacy·Terms·Feedback·Email Updates·

Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."