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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:TNFRSF13B

TNFRSF13B

437 papers

RefSeq Summary

The protein encoded by this gene is a lymphocyte-specific member of the tumor necrosis factor (TNF) receptor superfamily. It interacts with calcium-modulator and cyclophilin ligand (CAML). The protein...

Pfam Domains

TACI-CRD2aa 32–68UCSCTACI, cysteine-rich domain

TACI-CRD2aa 69–107UCSCTACI, cysteine-rich domain

Gene Aliases

HGNC Name

TNF receptor superfamily member 13B

HGNC Alias Symbols

TACI; CD267; IGAD2

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

1–12 of 276 variants

206 papers

chr17:16948873 A>G

NM_012452.3

p.C104R

c.310T>C

TACI-CRD2

Exome: 0.6% (AC=8186, hom=28)Genome: 0.4% (AC=597, hom=4)17 overlapping SVs

124 papers

chr17:16940415 G>T

NM_012452.3

p.A181E

c.542C>A

Exome: 0.5% (AC=7954, hom=44)Genome: 0.5% (AC=740, hom=5)15 overlapping SVs

42 papers

chr17:16948923 A>T

NM_012452.3

p.I87N

c.260T>A

TACI-CRD2

Exome: 0.0% (AC=718, hom=0)Genome: 0.0% (AC=53, hom=0)17 overlapping SVs

40 papers

chr17:16939677 G>A

NM_012452.3

p.P251L

c.752C>T

Exome: 11.5% (AC=168414, hom=11783)Genome: 12.8% (AC=19407, hom=1409)16 overlapping SVs

39 papers

chr17:16940352 C>T

NM_012452.3

p.R202H

c.605G>A

Exome: 0.1% (AC=1452, hom=1)Genome: 0.1% (AC=111, hom=0)15 overlapping SVs

38 papers

chr17:16948752 G>C

NM_012452.3

p.S144*

c.431C>G

Exome: 0.0% (AC=61, hom=0)Genome: 0.0% (AC=7, hom=0)17 overlapping SVs

37 papers

chr17:16948752 G>T

NM_012452.3

p.S144*

c.431C>A

Exome: 0.0% (AC=53, hom=0)Genome: 0.0% (AC=8, hom=0)17 overlapping SVs

33 papers

chr17:16948978 G>GT

NM_012452.3

p.S68insFs

c.204dupA

TACI-CRD2

Exome: 0.0% (AC=511, hom=1)Genome: 0.0% (AC=47, hom=0)17 overlapping SVs

26 papers

chr17:16939770 A>G

NM_012452.3

p.V220A

c.659T>C

Exome: 1.8% (AC=26112, hom=298)Genome: 1.5% (AC=2321, hom=21)16 overlapping SVs

22 papers

chr17:16940442 C>T

NM_012452.3

p.C172Y

c.515G>A

Exome: 0.0% (AC=254, hom=1)Genome: 0.0% (AC=29, hom=0)15 overlapping SVs

21 papers

chr17:16948968 C>T

NM_012452.3

p.R72H

c.215G>A

TACI-CRD2

Exome: 0.4% (AC=5376, hom=13)Genome: 0.3% (AC=391, hom=2)17 overlapping SVs

19 papers

chr17:16940378 G>T

NM_012452.3

p.C193*

c.579C>A

Exome: 0.0% (AC=61, hom=0)Genome: 0.0% (AC=7, hom=0)15 overlapping SVs

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Regarding the variants extracted from papers and shown text snippets from research papers, the following holds: "Some rights reserved. This work permits non-commercial use, distribution and reproduction in any medium, provided the original author and source are credited."