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Varaico: Literature-Extracted Genetic Variants

Include likely false extractions

Gene:TRIM4

Variant:p.T379A

TRIM4

34 papers

RefSeq Summary

The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil reg...

Pfam Domains

zf-C3HC4_4aa 12–52UCSCzinc finger of C3HC4-type, RING

zf-B_boxaa 82–123UCSCB-box zinc finger

SPRYaa 379–495UCSCSPRY domain

Gene Aliases

HGNC Name

tripartite motif containing 4

HGNC Alias Symbol

RNF87

Papers

Position

RefSeq ID

Protein change

DNA change

Pfam

gnomAD

Selected Variant

2 papers

chr7:99892453 T>C

NM_033091.3

p.T379A

c.1135A>G

SPRY

exact variant not in gnomAD97 overlapping SVs

Surrounding Variants

3 papers

chr7:99892567 G>A

NM_033091.3

p.P341S

c.1021C>T

Exome: 6.5% (AC=95530, hom=3370)Genome: 6.7% (AC=10125, hom=362)97 overlapping SVs

1 paper

chr7:99892323 A>G

NM_033091.3

p.V422A

c.1265T>C

SPRY

exact variant not in gnomAD97 overlapping SVs

1 paper

chr7:99892234 G>A

NM_033091.3

p.R452C

c.1354C>T

SPRY

Exome: 0.2% (AC=3340, hom=119)Genome: 0.2% (AC=309, hom=10)97 overlapping SVs

1 paper

chr7:99892191 A>G

NM_033091.3

p.V466A

c.1397T>C

SPRY

exact variant not in gnomAD97 overlapping SVs

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