Varaico: Literature-Extracted Genetic Variants

TRPS1

238 papers

RefSeq Summary

This gene encodes a transcription factor that represses GATA-regulated genes and binds to a dynein light chain protein. Binding of the encoded protein to the dynein light chain protein affects binding...

Pfam Domains

Znf_C2H2_Trps1_1staa 216–271UCSCTrps1 zinc finger C2H2-type 1

Znf_C2H2_Trps1_2ndaa 308–363UCSCTrps1 zinc finger C2H2-type 2

Znf_C2H2_Trps1_3rdaa 401–460UCSCTrps1 zinc finger C2H2-type 3

Znf_C2H2_Trps1_4thaa 519–598UCSCTrps1 zinc finger C2H2-type 4

Znf_C2H2_Trps1_5thaa 611–642UCSCTrps1 zinc finger C2H2-type 5

GATAaa 896–930UCSCGATA zinc finger

Gene Aliases

HGNC Name

transcriptional repressor GATA binding 1

HGNC Alias Symbols

LGCR; GC79

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

4 papers

NM_014112.5

p.A932T

c.2794G>A

Surrounding Variants

3 papers

NM_014112.5

p.A932S

c.2794G>T

7 papers

NM_014112.5

p.A932V

c.2795C>T

1 paper

NM_014112.5

p.C933R

c.2797T>C

2 papers

NM_001330599.2

p.G921V

c.2762G>T

NM_014112.5

p.G934V

c.2801G>T

1 paper

NM_014112.5

p.V929G

c.2786T>G

1 paper

NM_014112.5

p.V929fs

c.2785_2786fs

2 papers

NM_014112.5

p.Y928C

c.2783A>G

1 paper

NM_014112.5

p.Y928insFs

c.2783_2784insC

1 paper

NM_014112.5

p.L939_H940insFs

c.2817_2818insA

3 papers

NM_014112.5

p.H940fs

c.2818_2819fs

2 papers

NM_014112.5

p.H940_S941delFs

c.2819_2822del4

2 papers

NM_014112.5

p.S941_T942Splc

c.2823+1G>T