Varaico: Literature-Extracted Genetic Variants

TRPS1

238 papers

RefSeq Summary

This gene encodes a transcription factor that represses GATA-regulated genes and binds to a dynein light chain protein. Binding of the encoded protein to the dynein light chain protein affects binding...

Pfam Domains

Znf_C2H2_Trps1_1staa 216–271UCSCTrps1 zinc finger C2H2-type 1

Znf_C2H2_Trps1_2ndaa 308–363UCSCTrps1 zinc finger C2H2-type 2

Znf_C2H2_Trps1_3rdaa 401–460UCSCTrps1 zinc finger C2H2-type 3

Znf_C2H2_Trps1_4thaa 519–598UCSCTrps1 zinc finger C2H2-type 4

Znf_C2H2_Trps1_5thaa 611–642UCSCTrps1 zinc finger C2H2-type 5

GATAaa 896–930UCSCGATA zinc finger

Gene Aliases

HGNC Name

transcriptional repressor GATA binding 1

HGNC Alias Symbols

LGCR; GC79

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_014112.5

p.N296T

c.887A>C

Surrounding Variants

1 paper

NM_014112.5

p.R297C

c.889C>T

1 paper

NM_014112.5

p.K294del1

c.880_882delCTT

1 paper

NM_014112.5

p.K294*

c.880A>T

1 paper

NM_014112.5

p.K290R

c.869A>G

2 papers

NM_014112.5

p.I307F

c.919A>T

1 paper

NM_014112.5

p.H281R

c.842A>G

1 paper

NM_014112.5

p.R311S

c.933G>T

2 papers

NM_014112.5

p.R311S

c.933G>C

1 paper

NM_014112.5

p.L280delFs

c.838delG

1 paper

NM_014112.5

p.P312L

c.935C>T

1 paper

NM_014112.5

p.L278M

c.832T>A

1 paper

NM_014112.5

p.L315P

c.944T>C