Varaico: Literature-Extracted Genetic Variants

VCAN

394 papers

RefSeq Summary

This gene is a member of the aggrecan/versican proteoglycan family. The protein encoded is a large chondroitin sulfate proteoglycan and is a major component of the extracellular matrix. This protein i...

Pfam Domains

V-setaa 27–148UCSCImmunoglobulin V-set domain

Xlinkaa 150–244UCSCExtracellular link domain

Xlinkaa 251–346UCSCExtracellular link domain

EGFaa 3093–3123UCSCEGF-like domain

EGFaa 3131–3161UCSCEGF-like domain

Lectin_Caa 3186–3291UCSCLectin C-type domain

Gene Aliases

HGNC Name

versican

HGNC Previous Symbol

CSPG2

Papers

RefSeq ID

Protein change

DNA change

Selected Variant

1 paper

NM_004385.5

p.V2854A

c.8561T>C

Surrounding Variants

1 paper

NM_004385.5

p.G2851E

c.8552G>A

1 paper

NM_004385.5

p.S2860Y

c.8579C>A

1 paper

NM_004385.5

p.S2860F

c.8579C>T

1 paper

NM_004385.5

p.P2844P

c.8532C>G

2 papers

NM_004385.5

p.S2864Y

c.8591C>A

3 papers

NM_004385.5

p.A2874V

c.8621C>T

1 paper

NM_004385.5

p.T2830S

c.8489C>G

1 paper

NM_004385.5

p.T2830S

c.8488A>T

1 paper

NM_004385.5

p.Y2883*

c.8649C>A

1 paper

NM_004385.5

p.Y2883*

c.8649C>G

1 paper

NM_004385.5

p.A2818T

c.8452G>A

1 paper

NM_004385.5

p.S2891_L2892insA

c.8671_8675ins3